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Protein
Submitted name:

Sox3 protein

Gene

Sox3

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Sox3 proteinImported
Gene namesi
Name:Sox3Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:98365. Sox3.

PTM / Processingi

Proteomic databases

PaxDbiQ5RKW0.

Expressioni

Gene expression databases

BgeeiENSMUSG00000045179.
GenevisibleiQ5RKW0. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000115237.

Structurei

3D structure databases

ProteinModelPortaliQ5RKW0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini143 – 21169HMG box DNA-bindingInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG0527. Eukaryota.
ENOG4111FVF. LUCA.
HOVERGENiHBG105663.
KOiK09267.
OMAiALPPMHR.

Family and domain databases

Gene3Di1.10.30.10. 1 hit.
InterProiIPR009071. HMG_box_dom.
IPR029550. SOX-3.
IPR022097. SOX_fam.
[Graphical view]
PANTHERiPTHR10270:SF111. PTHR10270:SF111. 2 hits.
PfamiPF00505. HMG_box. 1 hit.
PF12336. SOXp. 1 hit.
[Graphical view]
SMARTiSM00398. HMG. 1 hit.
[Graphical view]
SUPFAMiSSF47095. SSF47095. 1 hit.
PROSITEiPS50118. HMG_BOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q5RKW0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
RPARENASGE RSPRVPADFA RSPSASLPFP PELPARRPLS TTPTESPGLF
60 70 80 90 100
TVAAPAPGAP SPPATLAHLL PAPAMYSLLE TELKNPVGPP TPAAGTGVPA
110 120 130 140 150
APGAAGKSGA NPAGGANAGN GGSGGANGGG GGGGGGGSDQ DRVKRPMNAF
160 170 180 190 200
MVWSRGQRRK MALENPKMHN SEISKRLGAD WKLLTDAEKR PFIDEAKRLR
210 220 230 240 250
AVHMKEYPDY KYRPRRKTKT LLKKDKYSLP GGLLPPGAAA AAAAAAAAAA
260 270 280 290 300
ASSPVGVGQR LDTYTHVNGW ANGAYSLVQE QLGYAQPPSM SSPPPPPALP
310 320 330 340 350
QMHRYDMAGL QYSPMMPPGA QSYMNAAAAA AAASGYGGMA PSAAAAAAAA
360 370 380 390 400
YGQQPATAAA AAAAAAAMSL GPMGSVVKSE PSSPPPAIAS HSQRACLGDL
410 420 430 440
RDMISMYLPP GGDAADAASP LPGGRLHGVH QHYQGAGTAV NGTVPLTHI
Length:449
Mass (Da):45,313
Last modified:December 21, 2004 - v1
Checksum:iB5386A3572C84DA7
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC052024 mRNA. Translation: AAH52024.1.
RefSeqiNP_033263.2. NM_009237.2.
UniGeneiMm.35784.

Genome annotation databases

GeneIDi20675.
KEGGimmu:20675.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC052024 mRNA. Translation: AAH52024.1.
RefSeqiNP_033263.2. NM_009237.2.
UniGeneiMm.35784.

3D structure databases

ProteinModelPortaliQ5RKW0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000115237.

Proteomic databases

PaxDbiQ5RKW0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi20675.
KEGGimmu:20675.

Organism-specific databases

CTDi6658.
MGIiMGI:98365. Sox3.

Phylogenomic databases

eggNOGiKOG0527. Eukaryota.
ENOG4111FVF. LUCA.
HOVERGENiHBG105663.
KOiK09267.
OMAiALPPMHR.

Miscellaneous databases

ChiTaRSiSox3. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000045179.
GenevisibleiQ5RKW0. MM.

Family and domain databases

Gene3Di1.10.30.10. 1 hit.
InterProiIPR009071. HMG_box_dom.
IPR029550. SOX-3.
IPR022097. SOX_fam.
[Graphical view]
PANTHERiPTHR10270:SF111. PTHR10270:SF111. 2 hits.
PfamiPF00505. HMG_box. 1 hit.
PF12336. SOXp. 1 hit.
[Graphical view]
SMARTiSM00398. HMG. 1 hit.
[Graphical view]
SUPFAMiSSF47095. SSF47095. 1 hit.
PROSITEiPS50118. HMG_BOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ5RKW0_MOUSE
AccessioniPrimary (citable) accession number: Q5RKW0
Entry historyi
Integrated into UniProtKB/TrEMBL: December 21, 2004
Last sequence update: December 21, 2004
Last modified: September 7, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.