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Protein

Serine/threonine-protein kinase PRP4 homolog

Gene

Prpf4b

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Has a role in pre-mRNA splicing. Phosphorylates SF2/ASF (By similarity).By similarity

Catalytic activityi

ATP + a protein = ADP + a phosphoprotein.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei717 – 7171ATPPROSITE-ProRule annotation
Active sitei815 – 8151Proton acceptorPROSITE-ProRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi693 – 7019ATPPROSITE-ProRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Kinase, Serine/threonine-protein kinase, Transferase

Keywords - Biological processi

mRNA processing, mRNA splicing

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Serine/threonine-protein kinase PRP4 homolog (EC:2.7.11.1)
Alternative name(s):
PRP4 pre-mRNA-processing factor 4 homolog
Gene namesi
Name:Prpf4b
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 17

Organism-specific databases

RGDi1307784. Prpf4b.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus, Spliceosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemovedBy similarity
Chaini2 – 10071006Serine/threonine-protein kinase PRP4 homologPRO_0000326140Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei2 – 21N-acetylalanineBy similarity
Modified residuei8 – 81PhosphoserineCombined sources
Modified residuei21 – 211PhosphoserineCombined sources
Modified residuei24 – 241PhosphoserineCombined sources
Modified residuei33 – 331PhosphoserineCombined sources
Modified residuei88 – 881PhosphoserineCombined sources
Modified residuei94 – 941PhosphoserineCombined sources
Modified residuei100 – 1001N6-acetyllysineBy similarity
Cross-linki118 – 118Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Modified residuei132 – 1321PhosphoserineBy similarity
Modified residuei141 – 1411PhosphotyrosineBy similarity
Modified residuei143 – 1431PhosphoserineCombined sources
Modified residuei145 – 1451PhosphoserineCombined sources
Cross-linki171 – 171Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Modified residuei240 – 2401PhosphoserineBy similarity
Modified residuei242 – 2421PhosphoserineBy similarity
Modified residuei258 – 2581PhosphoserineBy similarity
Modified residuei278 – 2781PhosphoserineBy similarity
Modified residuei294 – 2941PhosphoserineBy similarity
Modified residuei328 – 3281PhosphoserineBy similarity
Modified residuei354 – 3541PhosphoserineBy similarity
Modified residuei356 – 3561PhosphoserineBy similarity
Modified residuei366 – 3661PhosphoserineCombined sources
Modified residuei368 – 3681PhosphoserineCombined sources
Modified residuei385 – 3851PhosphothreonineBy similarity
Modified residuei387 – 3871PhosphoserineBy similarity
Modified residuei427 – 4271PhosphoserineBy similarity
Modified residuei431 – 4311PhosphoserineCombined sources
Modified residuei437 – 4371PhosphoserineBy similarity
Modified residuei518 – 5181PhosphoserineCombined sources
Modified residuei519 – 5191PhosphoserineCombined sources
Modified residuei520 – 5201PhosphoserineCombined sources
Modified residuei565 – 5651PhosphoserineBy similarity
Modified residuei569 – 5691PhosphoserineBy similarity
Modified residuei576 – 5761PhosphoserineBy similarity
Modified residuei578 – 5781PhosphoserineCombined sources
Modified residuei580 – 5801PhosphoserineCombined sources
Modified residuei717 – 7171N6-acetyllysineBy similarity
Modified residuei849 – 8491PhosphotyrosineCombined sources
Modified residuei852 – 8521PhosphoserineCombined sources

Post-translational modificationi

Phosphorylated by Clk1.By similarity

Keywords - PTMi

Acetylation, Isopeptide bond, Phosphoprotein, Ubl conjugation

Proteomic databases

PaxDbiQ5RKH1.
PRIDEiQ5RKH1.

PTM databases

iPTMnetiQ5RKH1.
PhosphoSiteiQ5RKH1.

Expressioni

Gene expression databases

ExpressionAtlasiQ5RKH1. baseline and differential.
GenevisibleiQ5RKH1. RN.

Interactioni

Subunit structurei

Identified in the spliceosome C complex. Interacts with Clk1 C-terminus.By similarity

Protein-protein interaction databases

BioGridi253413. 1 interaction.
STRINGi10116.ENSRNOP00000022902.

Structurei

3D structure databases

ProteinModelPortaliQ5RKH1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini687 – 1003317Protein kinasePROSITE-ProRule annotationAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi40 – 496457Arg/Lys-rich (basic)Add
BLAST
Compositional biasi41 – 7838His-richAdd
BLAST

Sequence similaritiesi

Contains 1 protein kinase domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0670. Eukaryota.
ENOG410XPAX. LUCA.
GeneTreeiENSGT00580000081366.
HOGENOMiHOG000043099.
HOVERGENiHBG055182.
InParanoidiQ5RKH1.
KOiK08827.
OMAiSGERDRY.
OrthoDBiEOG76HQ1K.
PhylomeDBiQ5RKH1.

Family and domain databases

InterProiIPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_dom.
IPR008271. Ser/Thr_kinase_AS.
[Graphical view]
PfamiPF00069. Pkinase. 1 hit.
[Graphical view]
SMARTiSM00220. S_TKc. 1 hit.
[Graphical view]
SUPFAMiSSF56112. SSF56112. 1 hit.
PROSITEiPS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00108. PROTEIN_KINASE_ST. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q5RKH1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAATEPPSLR EQPEMDDADN SEKSVNEENG EVSEDQSQNK HSRHKKKKHK
60 70 80 90 100
HRSKHKKHKH SSEEDRDKKH KHKHKHKKHK RKEVLDASDK EGLSPAKRTK
110 120 130 140 150
LDDLALLEDL EKQRALIKAE LDNELMEGKV QSGMGLILQG YESGSEEEGE
160 170 180 190 200
IHEKARNGNR SSTRSSSTRG KLEITDNKNS AKKRSKSRSK ERTRHRSDKR
210 220 230 240 250
KSKGAVEMMR EKANRSKSKE RRKSKSPSKR SKSQDQARKS KSPTLRRRSQ
260 270 280 290 300
EKVGKARSPA DEKIKSEEKG KIKDRKKSPI VNERSRDRSK KSKSPVDLRD
310 320 330 340 350
KSKDRRSRSK ERKSKRSEID KEKKPIKSPS KDASSGKENR SPSRRPGRSP
360 370 380 390 400
KRRSLSPKQR DKSRRSRSPL LNDRRSKQSK SPSRTLSPGR RAKSRSLERK
410 420 430 440 450
RREPERRRLS SPRTRPRDDI LGRCERSKDA SPINRWSPSR RRSRSPIRRR
460 470 480 490 500
SRSPLRRSRS PRRRSRSPRR RDRSRRSRSR LRRRSRSRGG HRRRSRSKVK
510 520 530 540 550
EDKFKGSLSE GMKVEQESSS DDNLEDFDVE EEDEEAVIEQ RRIQRQAIVQ
560 570 580 590 600
KYKYLAEDSN ISVPSEPSSP QSSTRSRSPS PDDILERVAA DVKEYERENV
610 620 630 640 650
DTFEASVKAK HNLMTVEQNN GSSQKKLLAP DMFTESDDMF AAYFDSARLR
660 670 680 690 700
AAGIGKDFKE NPNLRDNWTD AEGYYRVNIG EVLDKRYNVY GYTGQGVFSN
710 720 730 740 750
VVRARDNARA NQEVAVKIIR NNELMQKTGL KELEFLKKLN DADPDDKFHC
760 770 780 790 800
LRLFRHFYHK QHLCLVFEPL SMNLREVLKK YGKDVGLHIK AVRSYSQQLF
810 820 830 840 850
LALKLLKRCN ILHADIKPDN ILVNESKTIL KLCDFGSASH VADNDITPYL
860 870 880 890 900
VSRFYRAPEI IIGKSYDYGI DMWSVGCTLY ELYTGKILFP GKTNNHMLKL
910 920 930 940 950
AMDLKGKMPN KMIRKGVFKD QHFDQNLNFM YIEVDKVTER EKVTVMSTIN
960 970 980 990 1000
PTKDLLADLI GCQRLPEDQR KKVHQLKDLL DQILMLDPAK RISINQALQH

AFIQEKI
Length:1,007
Mass (Da):117,007
Last modified:December 21, 2004 - v1
Checksum:i310085987BA1549A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC085927 mRNA. Translation: AAH85927.1.
RefSeqiNP_001011923.1. NM_001011923.1.
UniGeneiRn.32654.

Genome annotation databases

EnsembliENSRNOT00000022902; ENSRNOP00000022902; ENSRNOG00000016705.
GeneIDi291078.
KEGGirno:291078.
UCSCiRGD:1307784. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC085927 mRNA. Translation: AAH85927.1.
RefSeqiNP_001011923.1. NM_001011923.1.
UniGeneiRn.32654.

3D structure databases

ProteinModelPortaliQ5RKH1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi253413. 1 interaction.
STRINGi10116.ENSRNOP00000022902.

PTM databases

iPTMnetiQ5RKH1.
PhosphoSiteiQ5RKH1.

Proteomic databases

PaxDbiQ5RKH1.
PRIDEiQ5RKH1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000022902; ENSRNOP00000022902; ENSRNOG00000016705.
GeneIDi291078.
KEGGirno:291078.
UCSCiRGD:1307784. rat.

Organism-specific databases

CTDi8899.
RGDi1307784. Prpf4b.

Phylogenomic databases

eggNOGiKOG0670. Eukaryota.
ENOG410XPAX. LUCA.
GeneTreeiENSGT00580000081366.
HOGENOMiHOG000043099.
HOVERGENiHBG055182.
InParanoidiQ5RKH1.
KOiK08827.
OMAiSGERDRY.
OrthoDBiEOG76HQ1K.
PhylomeDBiQ5RKH1.

Miscellaneous databases

PROiQ5RKH1.

Gene expression databases

ExpressionAtlasiQ5RKH1. baseline and differential.
GenevisibleiQ5RKH1. RN.

Family and domain databases

InterProiIPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_dom.
IPR008271. Ser/Thr_kinase_AS.
[Graphical view]
PfamiPF00069. Pkinase. 1 hit.
[Graphical view]
SMARTiSM00220. S_TKc. 1 hit.
[Graphical view]
SUPFAMiSSF56112. SSF56112. 1 hit.
PROSITEiPS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00108. PROTEIN_KINASE_ST. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Kidney.
  2. "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites."
    Hoffert J.D., Pisitkun T., Wang G., Shen R.-F., Knepper M.A.
    Proc. Natl. Acad. Sci. U.S.A. 103:7159-7164(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-852, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  3. "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues."
    Lundby A., Secher A., Lage K., Nordsborg N.B., Dmytriyev A., Lundby C., Olsen J.V.
    Nat. Commun. 3:876-876(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-8; SER-21; SER-24; SER-33; SER-88; SER-94; SER-143; SER-145; SER-366; SER-368; SER-431; SER-518; SER-519; SER-520; SER-578; SER-580 AND TYR-849, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiPRP4B_RAT
AccessioniPrimary (citable) accession number: Q5RKH1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 18, 2008
Last sequence update: December 21, 2004
Last modified: June 8, 2016
This is version 96 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.