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Protein

Leucine-rich repeat-containing protein 59

Gene

Lrrc59

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Required for nuclear import of FGF1, but not that of FGF2. Might regulate nuclear import of exogenous FGF1 by facilitating interaction with the nuclear import machinery and by transporting cytosolic FGF1 to, and possibly through, the nuclear pores (By similarity).By similarity

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Leucine-rich repeat-containing protein 59
Alternative name(s):
Protein p34
Gene namesi
Name:Lrrc59
Synonyms:Rbp34
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 10

Organism-specific databases

RGDi1305092. Lrrc59.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 244244CytoplasmicSequence analysisAdd
BLAST
Transmembranei245 – 26521HelicalSequence analysisAdd
BLAST
Topological domaini266 – 30742LumenalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Endoplasmic reticulum, Membrane, Microsome, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 307307Leucine-rich repeat-containing protein 59PRO_0000235161Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei1 – 11N-acetylmethionineBy similarity
Modified residuei23 – 231PhosphoserineBy similarity
Modified residuei25 – 251PhosphoserineBy similarity
Modified residuei73 – 731N6-succinyllysineBy similarity
Modified residuei135 – 1351N6-acetyllysineBy similarity

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

PaxDbiQ5RJR8.
PRIDEiQ5RJR8.

PTM databases

iPTMnetiQ5RJR8.

Expressioni

Gene expression databases

GenevisibleiQ5RJR8. RN.

Interactioni

Subunit structurei

Can form homodimers. Interacts with SGOL1. Interacts with FGF1.By similarity

Protein-protein interaction databases

BioGridi252266. 1 interaction.
MINTiMINT-4580716.
STRINGi10116.ENSRNOP00000004941.

Structurei

3D structure databases

ProteinModelPortaliQ5RJR8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati10 – 3122LRR 1Add
BLAST
Repeati40 – 6223LRR 2Add
BLAST
Repeati63 – 8422LRR 3Add
BLAST
Repeati86 – 10722LRR 4Add
BLAST
Repeati109 – 12820LRR 5Add
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili148 – 21669Sequence analysisAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi251 – 2577Poly-Leu

Sequence similaritiesi

Contains 5 LRR (leucine-rich) repeats.Curated

Keywords - Domaini

Coiled coil, Leucine-rich repeat, Repeat, Signal-anchor, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0473. Eukaryota.
ENOG4111GH4. LUCA.
GeneTreeiENSGT00390000017385.
HOGENOMiHOG000073534.
HOVERGENiHBG081933.
InParanoidiQ5RJR8.
OMAiDILQWVL.
OrthoDBiEOG7QC7ZJ.
PhylomeDBiQ5RJR8.
TreeFamiTF316929.

Family and domain databases

Gene3Di3.80.10.10. 1 hit.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
[Graphical view]
PfamiPF13855. LRR_8. 1 hit.
[Graphical view]
SMARTiSM00369. LRR_TYP. 4 hits.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 1 hit.
PROSITEiPS51450. LRR. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5RJR8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTKTGSKGGN LRDKLDGNEL DLSLSDLNEV PVKELAALPK ATVLDLSCNK
60 70 80 90 100
LSTLPSDFCG LTHLVKLDLS KNKLQQLPAD FGRLVNLQHL DLLNNRLVTL
110 120 130 140 150
PVSFAQLKNL KWLDLKDNPL DPVLAKVAGD CLDEKQCKQC ANKVLQHMKA
160 170 180 190 200
VQADQERERQ RRLEVEREAE KKREAKQQAK EAKERELRKR EKAEEKERRR
210 220 230 240 250
KEYDAQKASK REQEKKPKKE TNQAPKSKSG SRPRKPPPRK HNRSWAVLKG
260 270 280 290 300
LLLLLLLCVA GGLVVCRVTG LQQQPLCTSV NAIYDNAVQG LRHHEILQWV

LQTDSQQ
Length:307
Mass (Da):34,869
Last modified:December 21, 2004 - v1
Checksum:iBCAD25C593C1FE89
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D13623 mRNA. Translation: BAA02786.1.
BC086530 mRNA. Translation: AAH86530.1.
RefSeqiNP_001008281.1. NM_001008280.1.
UniGeneiRn.2783.

Genome annotation databases

EnsembliENSRNOT00000004941; ENSRNOP00000004941; ENSRNOG00000003524.
GeneIDi287633.
KEGGirno:287633.
UCSCiRGD:1305092. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D13623 mRNA. Translation: BAA02786.1.
BC086530 mRNA. Translation: AAH86530.1.
RefSeqiNP_001008281.1. NM_001008280.1.
UniGeneiRn.2783.

3D structure databases

ProteinModelPortaliQ5RJR8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi252266. 1 interaction.
MINTiMINT-4580716.
STRINGi10116.ENSRNOP00000004941.

PTM databases

iPTMnetiQ5RJR8.

Proteomic databases

PaxDbiQ5RJR8.
PRIDEiQ5RJR8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000004941; ENSRNOP00000004941; ENSRNOG00000003524.
GeneIDi287633.
KEGGirno:287633.
UCSCiRGD:1305092. rat.

Organism-specific databases

CTDi55379.
RGDi1305092. Lrrc59.

Phylogenomic databases

eggNOGiKOG0473. Eukaryota.
ENOG4111GH4. LUCA.
GeneTreeiENSGT00390000017385.
HOGENOMiHOG000073534.
HOVERGENiHBG081933.
InParanoidiQ5RJR8.
OMAiDILQWVL.
OrthoDBiEOG7QC7ZJ.
PhylomeDBiQ5RJR8.
TreeFamiTF316929.

Miscellaneous databases

NextBioi626667.
PROiQ5RJR8.

Gene expression databases

GenevisibleiQ5RJR8. RN.

Family and domain databases

Gene3Di3.80.10.10. 1 hit.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
[Graphical view]
PfamiPF13855. LRR_8. 1 hit.
[Graphical view]
SMARTiSM00369. LRR_TYP. 4 hits.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 1 hit.
PROSITEiPS51450. LRR. 4 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Ribosome-binding protein p34 is a member of the leucine-rich-repeat-protein superfamily."
    Ohsumi T., Ichimura T., Sugano H., Omata S., Isobe T., Kuwano R.
    Biochem. J. 294:465-472(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], SUBCELLULAR LOCATION, TOPOLOGY.
    Tissue: Liver.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Ovary.

Entry informationi

Entry nameiLRC59_RAT
AccessioniPrimary (citable) accession number: Q5RJR8
Secondary accession number(s): Q63742
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 16, 2006
Last sequence update: December 21, 2004
Last modified: May 11, 2016
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.