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Q5RI06 (Q5RI06_DANRE) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 82. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Prostaglandin-endoperoxide synthase 2b EMBL AAI39569.1

Uncharacterized protein Ensembl ENSDARP00000003684
Gene names
Name:ptgs2b ZFIN ZDB-GENE-041014-323 EMBL AAI39569.1 Ensembl ENSDARP00000003684
Synonyms:si:dkey-97o5.6 ZFIN ZDB-GENE-041014-323
OrganismDanio rerio (Zebrafish) (Brachydanio rerio) [Reference proteome] Ensembl ENSDARP00000003684
Taxonomic identifier7955 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Protein attributes

Sequence length606 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q5RI06 [UniParc].

Last modified December 21, 2004. Version 1.
Checksum: C0601EA49A06EA6A

FASTA60669,465
        10         20         30         40         50         60 
MKSSVLFIFL LLGFVVCTGA NPCCSHPCQN RGVCTEMGSD AYECDCTRTG YYGQNCTTPE 

        70         80         90        100        110        120 
FLTWVKVSLK PSPNTVHYIL THFKSLWNII NNVSFLRNGI MRYVLTSRAH LIDSPPTFNA 

       130        140        150        160        170        180 
DYGYKSWEAY SNLSYYTRTL PPVPRDCPTP MGVAGKKELP DVKMLAEKLL LRRKFIPDPQ 

       190        200        210        220        230        240 
RTNLMFAFFA QHFTHQFFKS DMKKGPAFTT ALNHGVDLAH IYGQNLDRQH KLRLFKDGKL 

       250        260        270        280        290        300 
RYQILDGEVY PPTVSEVQVD MHYPPHVPES RRFAVGHEAF GLVPGLMMYA TIWLREHNRV 

       310        320        330        340        350        360 
CDILKQEHPD WDDERLFQTS RLILIGETIK IVIEDYVQHL SGYYFKLKFD PELLFNERFQ 

       370        380        390        400        410        420 
YQNRISSEFN TLYHWHPLMP DDFHIQDEVY NYQQFLFNTS ILTDYGVNSL VESFNKQIAG 

       430        440        450        460        470        480 
RVAGGRNVAP AVLRVAIKSI ENSRQMRYQS INAYRKRFNM KPYRSFEEMT GEKEMAAELE 

       490        500        510        520        530        540 
EMYGDVDAVE LYAGLLVEKP RSNAIFGETM VEMGAPYSLK GLMGNPICSP EYWKPSTFGG 

       550        560        570        580        590        600 
KVGFEIVNSA SLQNLVCNNV NGPCPMASFY VPNVKDSLPT TINASTSQSD RNVNPTVLLK 


ERTSEL 

« Hide

References

« Hide 'large scale' references
[1]"The zebrafish genome contains two inducible, functional cyclooxygenase-2 genes."
Ishikawa T., Griffin K.J.P., Banerjee U., Herschman H.R.
Biochem. Biophys. Res. Commun. 352:181-187(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[2]NIH - Zebrafish Gene Collection (ZGC) project
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: Singapore local strain EMBL AAI39569.1.
Tissue: Embryo EMBL AAI39569.1.
[3]"The zebrafish reference genome sequence and its relationship to the human genome."
Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J. expand/collapse author list , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Tuebingen Ensembl ENSDARP00000003684.
[4]Ensembl
Submitted (AUG-2013) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Tuebingen Ensembl ENSDARP00000003684.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BX323056 Genomic DNA. No translation available.
BC139568 mRNA. Translation: AAI39569.1.
DQ494791 mRNA. Translation: ABF50051.1.
RefSeqNP_001020675.1. NM_001025504.2.
UniGeneDr.48719.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING7955.ENSDARP00000003684.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSDART00000010028; ENSDARP00000003684; ENSDARG00000010276.
GeneID559020.
KEGGdre:559020.

Organism-specific databases

CTD559020.
ZFINZDB-GENE-041014-323. ptgs2b.

Phylogenomic databases

eggNOGNOG39991.
GeneTreeENSGT00390000010743.
HOGENOMHOG000013149.
HOVERGENHBG000366.
InParanoidQ5RI06.
KOK11987.
OMAICNNVKG.
OrthoDBEOG7RFTHC.
TreeFamTF329675.

Family and domain databases

Gene3D1.10.640.10. 1 hit.
InterProIPR000742. EG-like_dom.
IPR010255. Haem_peroxidase.
IPR002007. Haem_peroxidase_animal.
IPR019791. Haem_peroxidase_animal_subgr.
[Graphical view]
PfamPF03098. An_peroxidase. 2 hits.
[Graphical view]
PRINTSPR00457. ANPEROXIDASE.
SUPFAMSSF48113. SSF48113. 1 hit.
PROSITEPS50026. EGF_3. 1 hit.
PS50292. PEROXIDASE_3. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio20882745.
PROQ5RI06.

Entry information

Entry nameQ5RI06_DANRE
AccessionPrimary (citable) accession number: Q5RI06
Entry history
Integrated into UniProtKB/TrEMBL: December 21, 2004
Last sequence update: December 21, 2004
Last modified: February 19, 2014
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)