Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Thyroid transcription factor 1-associated protein 26 homolog

Gene

ccdc59

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-DRE-5683826. Surfactant metabolism.

Names & Taxonomyi

Protein namesi
Recommended name:
Thyroid transcription factor 1-associated protein 26 homolog
Gene namesi
Name:ccdc59
ORF Names:si:dkey-21h14.2
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 4

Organism-specific databases

ZFINiZDB-GENE-041210-91. ccdc59.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 256256Thyroid transcription factor 1-associated protein 26 homologPRO_0000298943Add
BLAST

Proteomic databases

PaxDbiQ5RGP9.

Family & Domainsi

Sequence similaritiesi

Belongs to the TAP26 family.Curated

Phylogenomic databases

eggNOGiKOG3777. Eukaryota.
ENOG410ZNK1. LUCA.
GeneTreeiENSGT00390000006546.
HOGENOMiHOG000154507.
HOVERGENiHBG108545.
InParanoidiQ5RGP9.
OMAiKIQQNYK.
OrthoDBiEOG7QG460.
PhylomeDBiQ5RGP9.
TreeFamiTF324429.

Family and domain databases

InterProiIPR013730. Fyv7/TAP26.
[Graphical view]
PANTHERiPTHR15657. PTHR15657. 1 hit.
PfamiPF08524. rRNA_processing. 1 hit.
[Graphical view]
PRINTSiPR01854. BR22PROTEIN.

Sequencei

Sequence statusi: Complete.

Q5RGP9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPFKQNAKN KGPIRGKQFN NKFQRGGLSH NAKRKRKWVP EDKVFDGSLK
60 70 80 90 100
EGQGFAFKRK EKVKHEYNKL LRKERKRKQE SKVQLQEEYP EHLKHLYLAE
110 120 130 140 150
RERLDEEEQE KKKKRCKGRA VEEDIEEDDD KLNKDLGSSS SEKNITNTST
160 170 180 190 200
DQTIAPASSN EPAQPESSHK TTFFQRKQNI SSYQKTKQEY ERIKEERARK
210 220 230 240 250
REEILKDKAQ REEALKKYKE KKIATYQLLK RKTKKGQPNL NLQMELLLQK

IQAQRK
Length:256
Mass (Da):30,429
Last modified:December 21, 2004 - v1
Checksum:i12DABB13A9CAF19B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX784029 Genomic DNA. Translation: CAI20940.1.
RefSeqiNP_001038519.1. NM_001045054.1.
UniGeneiDr.84214.

Genome annotation databases

EnsembliENSDART00000140362; ENSDARP00000119374; ENSDARG00000045755.
GeneIDi564488.
KEGGidre:564488.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX784029 Genomic DNA. Translation: CAI20940.1.
RefSeqiNP_001038519.1. NM_001045054.1.
UniGeneiDr.84214.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiQ5RGP9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000140362; ENSDARP00000119374; ENSDARG00000045755.
GeneIDi564488.
KEGGidre:564488.

Organism-specific databases

CTDi29080.
ZFINiZDB-GENE-041210-91. ccdc59.

Phylogenomic databases

eggNOGiKOG3777. Eukaryota.
ENOG410ZNK1. LUCA.
GeneTreeiENSGT00390000006546.
HOGENOMiHOG000154507.
HOVERGENiHBG108545.
InParanoidiQ5RGP9.
OMAiKIQQNYK.
OrthoDBiEOG7QG460.
PhylomeDBiQ5RGP9.
TreeFamiTF324429.

Enzyme and pathway databases

ReactomeiR-DRE-5683826. Surfactant metabolism.

Miscellaneous databases

PROiQ5RGP9.

Family and domain databases

InterProiIPR013730. Fyv7/TAP26.
[Graphical view]
PANTHERiPTHR15657. PTHR15657. 1 hit.
PfamiPF08524. rRNA_processing. 1 hit.
[Graphical view]
PRINTSiPR01854. BR22PROTEIN.
ProtoNetiSearch...

Publicationsi

  1. "The zebrafish reference genome sequence and its relationship to the human genome."
    Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
    , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
    Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Tuebingen.

Entry informationi

Entry nameiTAP26_DANRE
AccessioniPrimary (citable) accession number: Q5RGP9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 21, 2007
Last sequence update: December 21, 2004
Last modified: July 6, 2016
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.