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Q5RGN0

- NBPFN_HUMAN

UniProt

Q5RGN0 - NBPFN_HUMAN

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Protein
Putative neuroblastoma breakpoint family member 24
Gene
NBPF24
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 2 out of 5 - Protein uncertaini

Names & Taxonomyi

Protein namesi
Recommended name:
Putative neuroblastoma breakpoint family member 24
Gene namesi
Name:NBPF24
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 1

Organism-specific databases

HGNCiHGNC:27299. NBPF24.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA165752039.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 790790Putative neuroblastoma breakpoint family member 24
PRO_0000405313Add
BLAST

Proteomic databases

PaxDbiQ5RGN0.
PRIDEiQ5RGN0.

Expressioni

Gene expression databases

BgeeiQ5RGN0.

Interactioni

Protein-protein interaction databases

BioGridi609324. 1 interaction.

Structurei

3D structure databases

ProteinModelPortaliQ5RGN0.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini90 – 18495NBPF 1
Add
BLAST
Domaini361 – 45393NBPF 2
Add
BLAST
Domaini454 – 54289NBPF 3
Add
BLAST
Domaini545 – 60056NBPF 4
Add
BLAST
Domaini601 – 69292NBPF 5
Add
BLAST
Domaini695 – 79096NBPF 6
Add
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili14 – 5542 Reviewed prediction
Add
BLAST
Coiled coili264 – 32663 Reviewed prediction
Add
BLAST

Sequence similaritiesi

Belongs to the NBPF family.
Contains 6 NBPF domains.

Keywords - Domaini

Coiled coil, Repeat

Phylogenomic databases

eggNOGibiNOG22098.
HOGENOMiHOG000049041.
HOVERGENiHBG058300.
TreeFamiTF341151.

Family and domain databases

InterProiIPR010630. NBPF_dom.
[Graphical view]
PfamiPF06758. DUF1220. 6 hits.
[Graphical view]
PROSITEiPS51316. NBPF. 6 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5RGN0-1 [UniParc]FASTAAdd to Basket

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MFSNSTGRLP GQPTQEIQQY KVLVHSQERE LTQLREKLRE GRDASRSLNE    50
HLQALLTPDE PDKSQGQDLQ EQLAEGCRLA QHLVQKLSPE NDEDEDEDVQ 100
VEEDEKVLES SAPREVQKAE ESKVPEDSLE ECAITCSNSH GPCDSIQPHK 150
NIKITFEEDK VNSSLVVDRE SSHDGCQDAL NILPVPGPTS SATNVSMVVS 200
AGPLSSEKAE MNILEINEKL CPQLAEKKQQ FRSLKEKCFV TQVACFLAKQ 250
QNKYKYEECK DLIKSMLRNE RQFKEEKLAE QLKQAEELRQ YKVLVHSQER 300
ELTQLREKLR EGRDASRSLN EHLQALLTPD EPDKSQGQDL QEQLAEGCRL 350
AQHLVQKLSP ENDNDDDEDV QVEVAEKVQK SSSPREMQKA EEKEVPEDSL 400
EECAITCSNS HGPYDSNQPH RKTKITFEED KVDSTLIGSS SHVEWEDAVH 450
IIPENESDDE EEEEKGPVSP RNLQESEEEE VPQESWDEGY STLSIPPERL 500
ASYQSYSSTF HSLEEQQVCM AVDIGRHRWD QVKKEDQEAT GPRLSRELLD 550
EKEPEVLQDS LDRCYSTPSV YLGLTDSCQP YRSAFYVLEQ QRIGLAVDMD 600
EIEKYQEVEE DQDPSCPRLS RELLAEKEPE VLQDSLDRCY STPSGYLELP 650
DLGQPYRSAV YSLEEQYLGL ALDVDRIKKD QEEEEDQGPP CPRLSRELLE 700
VVEPEVLQDS LDVIQLLPVV LNSLTPASPT EVPFMHWRKN MLAFLLTWEK 750
LKRRGRGRKE GEEDQRRKEE GEEKKGKKIK THHAPGSAAC 790
Length:790
Mass (Da):90,230
Last modified:December 21, 2004 - v1
Checksum:iDCC4C07DA3050DA1
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX842679 Genomic DNA. Translation: CAI23637.1.
UniGeneiHs.721588.
Hs.730358.
Hs.740943.
Hs.744018.

Genome annotation databases

UCSCiuc001eox.3. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX842679 Genomic DNA. Translation: CAI23637.1 .
UniGenei Hs.721588.
Hs.730358.
Hs.740943.
Hs.744018.

3D structure databases

ProteinModelPortali Q5RGN0.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 609324. 1 interaction.

Proteomic databases

PaxDbi Q5RGN0.
PRIDEi Q5RGN0.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

UCSCi uc001eox.3. human.

Organism-specific databases

GeneCardsi GC01M147575.
HGNCi HGNC:27299. NBPF24.
neXtProti NX_Q5RGN0.
PharmGKBi PA165752039.
GenAtlasi Search...

Phylogenomic databases

eggNOGi biNOG22098.
HOGENOMi HOG000049041.
HOVERGENi HBG058300.
TreeFami TF341151.

Miscellaneous databases

NextBioi 13622359.

Gene expression databases

Bgeei Q5RGN0.

Family and domain databases

InterProi IPR010630. NBPF_dom.
[Graphical view ]
Pfami PF06758. DUF1220. 6 hits.
[Graphical view ]
PROSITEi PS51316. NBPF. 6 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The DNA sequence and biological annotation of human chromosome 1."
    Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K.
    , Atkinson A., Cooper R., Jones C., Hall R.E., Andrews T.D., Lloyd C., Ainscough R., Almeida J.P., Ambrose K.D., Anderson F., Andrew R.W., Ashwell R.I.S., Aubin K., Babbage A.K., Bagguley C.L., Bailey J., Beasley H., Bethel G., Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., Buckley D., Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., Clarke G., Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., Davies J., Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H., Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L., Ghori M.R.J., Gibson R., Gilby L.M., Gillett W., Glithero R.J., Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R., Hammond S., Harrison E.S.I., Hart E., Haugen E., Heath P.D., Holmes S., Holt K., Howden P.J., Hunt A.R., Hunt S.E., Hunter G., Isherwood J., James R., Johnson C., Johnson D., Joy A., Kay M., Kershaw J.K., Kibukawa M., Kimberley A.M., King A., Knights A.J., Lad H., Laird G., Lawlor S., Leongamornlert D.A., Lloyd D.M., Loveland J., Lovell J., Lush M.J., Lyne R., Martin S., Mashreghi-Mohammadi M., Matthews L., Matthews N.S.W., McLaren S., Milne S., Mistry S., Moore M.J.F., Nickerson T., O'Dell C.N., Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V., Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J., Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E., Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C., Subramanian S., Sycamore N., Tracey A., Tromans A., Van Helmond Z., Wall M., Wallis J.M., White S., Whitehead S.L., Wilkinson J.E., Willey D.L., Williams H., Wilming L., Wray P.W., Wu Z., Coulson A., Vaudin M., Sulston J.E., Durbin R.M., Hubbard T., Wooster R., Dunham I., Carter N.P., McVean G., Ross M.T., Harrow J., Olson M.V., Beck S., Rogers J., Bentley D.R.
    Nature 441:315-321(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiNBPFN_HUMAN
AccessioniPrimary (citable) accession number: Q5RGN0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 8, 2011
Last sequence update: December 21, 2004
Last modified: April 16, 2014
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Miscellaneous

Encoded by one of the numerous copies of NBPF genes clustered in the p36, p12 and q21 region of the chromosome 1.

Caution

Could be the product of a pseudogene.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 1
    Human chromosome 1: entries, gene names and cross-references to MIM
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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