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Q5RGN0

- NBPFN_HUMAN

UniProt

Q5RGN0 - NBPFN_HUMAN

Protein

Putative neuroblastoma breakpoint family member 24

Gene

NBPF24

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 2 out of 5- Protein uncertaini
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    • History
      Entry version 64 (01 Oct 2014)
      Sequence version 1 (21 Dec 2004)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative neuroblastoma breakpoint family member 24
    Gene namesi
    Name:NBPF24
    OrganismiHomo sapiens (Human)
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome 1

    Organism-specific databases

    HGNCiHGNC:27299. NBPF24.

    Pathology & Biotechi

    Organism-specific databases

    PharmGKBiPA165752039.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 790790Putative neuroblastoma breakpoint family member 24PRO_0000405313Add
    BLAST

    Proteomic databases

    PaxDbiQ5RGN0.
    PRIDEiQ5RGN0.

    Expressioni

    Gene expression databases

    BgeeiQ5RGN0.

    Interactioni

    Protein-protein interaction databases

    BioGridi609324. 1 interaction.

    Structurei

    3D structure databases

    ProteinModelPortaliQ5RGN0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini90 – 18495NBPF 1PROSITE-ProRule annotationAdd
    BLAST
    Domaini361 – 45393NBPF 2PROSITE-ProRule annotationAdd
    BLAST
    Domaini454 – 54289NBPF 3PROSITE-ProRule annotationAdd
    BLAST
    Domaini545 – 60056NBPF 4PROSITE-ProRule annotationAdd
    BLAST
    Domaini601 – 69292NBPF 5PROSITE-ProRule annotationAdd
    BLAST
    Domaini695 – 79096NBPF 6PROSITE-ProRule annotationAdd
    BLAST

    Coiled coil

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Coiled coili14 – 5542Sequence AnalysisAdd
    BLAST
    Coiled coili264 – 32663Sequence AnalysisAdd
    BLAST

    Sequence similaritiesi

    Belongs to the NBPF family.Curated
    Contains 6 NBPF domains.PROSITE-ProRule annotation

    Keywords - Domaini

    Coiled coil, Repeat

    Phylogenomic databases

    eggNOGibiNOG22098.
    HOGENOMiHOG000049041.
    HOVERGENiHBG058300.
    TreeFamiTF341151.

    Family and domain databases

    InterProiIPR010630. NBPF_dom.
    [Graphical view]
    PfamiPF06758. DUF1220. 6 hits.
    [Graphical view]
    PROSITEiPS51316. NBPF. 6 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q5RGN0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MFSNSTGRLP GQPTQEIQQY KVLVHSQERE LTQLREKLRE GRDASRSLNE    50
    HLQALLTPDE PDKSQGQDLQ EQLAEGCRLA QHLVQKLSPE NDEDEDEDVQ 100
    VEEDEKVLES SAPREVQKAE ESKVPEDSLE ECAITCSNSH GPCDSIQPHK 150
    NIKITFEEDK VNSSLVVDRE SSHDGCQDAL NILPVPGPTS SATNVSMVVS 200
    AGPLSSEKAE MNILEINEKL CPQLAEKKQQ FRSLKEKCFV TQVACFLAKQ 250
    QNKYKYEECK DLIKSMLRNE RQFKEEKLAE QLKQAEELRQ YKVLVHSQER 300
    ELTQLREKLR EGRDASRSLN EHLQALLTPD EPDKSQGQDL QEQLAEGCRL 350
    AQHLVQKLSP ENDNDDDEDV QVEVAEKVQK SSSPREMQKA EEKEVPEDSL 400
    EECAITCSNS HGPYDSNQPH RKTKITFEED KVDSTLIGSS SHVEWEDAVH 450
    IIPENESDDE EEEEKGPVSP RNLQESEEEE VPQESWDEGY STLSIPPERL 500
    ASYQSYSSTF HSLEEQQVCM AVDIGRHRWD QVKKEDQEAT GPRLSRELLD 550
    EKEPEVLQDS LDRCYSTPSV YLGLTDSCQP YRSAFYVLEQ QRIGLAVDMD 600
    EIEKYQEVEE DQDPSCPRLS RELLAEKEPE VLQDSLDRCY STPSGYLELP 650
    DLGQPYRSAV YSLEEQYLGL ALDVDRIKKD QEEEEDQGPP CPRLSRELLE 700
    VVEPEVLQDS LDVIQLLPVV LNSLTPASPT EVPFMHWRKN MLAFLLTWEK 750
    LKRRGRGRKE GEEDQRRKEE GEEKKGKKIK THHAPGSAAC 790
    Length:790
    Mass (Da):90,230
    Last modified:December 21, 2004 - v1
    Checksum:iDCC4C07DA3050DA1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BX842679 Genomic DNA. Translation: CAI23637.1.
    UniGeneiHs.721588.
    Hs.730358.
    Hs.740943.
    Hs.744018.

    Genome annotation databases

    UCSCiuc001eox.3. human.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BX842679 Genomic DNA. Translation: CAI23637.1 .
    UniGenei Hs.721588.
    Hs.730358.
    Hs.740943.
    Hs.744018.

    3D structure databases

    ProteinModelPortali Q5RGN0.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 609324. 1 interaction.

    Proteomic databases

    PaxDbi Q5RGN0.
    PRIDEi Q5RGN0.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    UCSCi uc001eox.3. human.

    Organism-specific databases

    GeneCardsi GC01M147575.
    HGNCi HGNC:27299. NBPF24.
    neXtProti NX_Q5RGN0.
    PharmGKBi PA165752039.
    GenAtlasi Search...

    Phylogenomic databases

    eggNOGi biNOG22098.
    HOGENOMi HOG000049041.
    HOVERGENi HBG058300.
    TreeFami TF341151.

    Miscellaneous databases

    NextBioi 13622359.

    Gene expression databases

    Bgeei Q5RGN0.

    Family and domain databases

    InterProi IPR010630. NBPF_dom.
    [Graphical view ]
    Pfami PF06758. DUF1220. 6 hits.
    [Graphical view ]
    PROSITEi PS51316. NBPF. 6 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The DNA sequence and biological annotation of human chromosome 1."
      Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K.
      , Atkinson A., Cooper R., Jones C., Hall R.E., Andrews T.D., Lloyd C., Ainscough R., Almeida J.P., Ambrose K.D., Anderson F., Andrew R.W., Ashwell R.I.S., Aubin K., Babbage A.K., Bagguley C.L., Bailey J., Beasley H., Bethel G., Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., Buckley D., Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., Clarke G., Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., Davies J., Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H., Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L., Ghori M.R.J., Gibson R., Gilby L.M., Gillett W., Glithero R.J., Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R., Hammond S., Harrison E.S.I., Hart E., Haugen E., Heath P.D., Holmes S., Holt K., Howden P.J., Hunt A.R., Hunt S.E., Hunter G., Isherwood J., James R., Johnson C., Johnson D., Joy A., Kay M., Kershaw J.K., Kibukawa M., Kimberley A.M., King A., Knights A.J., Lad H., Laird G., Lawlor S., Leongamornlert D.A., Lloyd D.M., Loveland J., Lovell J., Lush M.J., Lyne R., Martin S., Mashreghi-Mohammadi M., Matthews L., Matthews N.S.W., McLaren S., Milne S., Mistry S., Moore M.J.F., Nickerson T., O'Dell C.N., Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V., Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J., Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E., Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C., Subramanian S., Sycamore N., Tracey A., Tromans A., Van Helmond Z., Wall M., Wallis J.M., White S., Whitehead S.L., Wilkinson J.E., Willey D.L., Williams H., Wilming L., Wray P.W., Wu Z., Coulson A., Vaudin M., Sulston J.E., Durbin R.M., Hubbard T., Wooster R., Dunham I., Carter N.P., McVean G., Ross M.T., Harrow J., Olson M.V., Beck S., Rogers J., Bentley D.R.
      Nature 441:315-321(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiNBPFN_HUMAN
    AccessioniPrimary (citable) accession number: Q5RGN0
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 8, 2011
    Last sequence update: December 21, 2004
    Last modified: October 1, 2014
    This is version 64 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Miscellaneous

    Encoded by one of the numerous copies of NBPF genes clustered in the p36, p12 and q21 region of the chromosome 1.

    Caution

    Could be the product of a pseudogene.Curated

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Human chromosome 1
      Human chromosome 1: entries, gene names and cross-references to MIM
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3