Leukocyte common antigen - Rattus norvegicus (Rat)

Contribute

Read comments (0) or add your own

Unreviewed, UniProtKB/TrEMBL Q5R3Z5 (Q5R3Z5_RAT)

Last modified November 24, 2009. Version 21. History...

Clusters with 100%, 90%, 50% identity |

Third-party data |

Customize display

text xml rdf/xml gff fasta

Names and origin · Protein attributes · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information

Names and origin

Protein names

Submitted name:
Leukocyte common antigen EMBL AAA41515.1

Gene names

Name:

Ptprc RGD 3451

Organism

Rattus norvegicus (Rat) EMBL AAA41515.1

Taxonomic identifier

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	197 AA.
Sequence status	Fragment.
Protein existence	Evidence at transcript level.

Ontologies

Gene Ontology (GO)
Biological process	protein amino acid dephosphorylation Traceable author statement. Source: RGD response to gamma radiation Inferred from direct assay. Source: RGD
Cellular component	cell surface Inferred from direct assay. Source: RGD integral to membrane Inferred from direct assay. Source: RGD internal side of plasma membrane Traceable author statement. Source: RGD
Molecular function	protein binding Inferred from physical interaction. Source: RGD protein kinase regulator activity Traceable author statement. Source: RGD transmembrane receptor protein tyrosine phosphatase activity Traceable author statement. Source: RGD
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Experimental info

Non-terminal residue

1

EMBL AAA41515.1

Non-terminal residue

1

EMBL AAA41515.1

Sequences

Sequence

Length

Mass (Da)

Tools

Q5R3Z5-1 [UniParc].

Last modified December 21, 2004. Version 1.
Checksum: 1573909E07A9271F
Show »

197

21,562

        10         20         30         40         50         60 
QGTTDDGLDT TEIVLLPQTD PLPARTTEFT PPSISERGNG SSETTYLPGA NLTTPAPSTL 

        70         80         90        100        110        120 
GFASNTTTST EIATPQTKPS CDEKFGNVTV RYIYDDSSKN FNANLEGDKK PKCEHTDCEK 

       130        140        150        160        170        180 
ELKNLPECSQ KNVTLSNGSC TPDKIINLDV PPGTHNFNLT NCTPDIEANT SICLEWKIKN 

       190 
KFTCDIQKIS YNYRCTP

References

[1]	"Gene structure of rat leukocyte common antigen (LCA): Alternative splicing of three exons." Jackson D.I., Barclay A.N. Immunogenetics 0:0-0(0) Cited for: NUCLEOTIDE SEQUENCE.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	M18347, M18348, M18349 Genomic DNA. Translation: AAA41515.1.
IPI	IPI00851132.
UniGene	Rn.90166
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	Q5R3Z5.
Genome annotation databases
Ensembl	ENSRNOT00000029865; ENSRNOP00000029889; ENSRNOG00000000655; Rattus norvegicus. [Genome view]
Phylogenomic databases
HOVERGEN	Q5R3Z5.
Gene expression databases
ArrayExpress	Q5R3Z5.
Genevestigator	Q5R3Z5.
Family and domain databases
ProtoNet	Search...

Entry information

Entry name

Q5R3Z5_RAT

Accession

Primary (citable) accession number: Q5R3Z5

Entry history

Integrated into UniProtKB/TrEMBL:	December 21, 2004
Last sequence update:	December 21, 2004
Last modified:	November 24, 2009
This is version 21 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names and origin · Protein attributes · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information