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Q5QZT7 (Q5QZT7_IDILO) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 50. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Monomeric isocitrate dehydrogenase EMBL AAV82273.1
Gene names
Ordered Locus Names:IL1433 EMBL AAV82273.1
OrganismIdiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) [Complete proteome] [HAMAP] EMBL AAV82273.1
Taxonomic identifier283942 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Idiomarinaceae › Idiomarina ›

Protein attributes

Sequence length741 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 1 magnesium or manganese ion per subunit By similarity. PIRSR PIRSR009407-3

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region134 – 1418Substrate binding By similarity PIRSR PIRSR009407-2

Sites

Metal binding3511Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5491Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5531Magnesium or manganese By similarity PIRSR PIRSR009407-3
Binding site1471Substrate By similarity PIRSR PIRSR009407-2
Binding site5481Substrate By similarity PIRSR PIRSR009407-2
Site2561Critical for catalysis By similarity PIRSR PIRSR009407-1
Site4211Critical for catalysis By similarity PIRSR PIRSR009407-1

Sequences

Sequence LengthMass (Da)Tools
Q5QZT7 [UniParc].

Last modified January 4, 2005. Version 1.
Checksum: 9EA88DA0DD15246E

FASTA74182,455
        10         20         30         40         50         60 
MSTDKAKIIY TETDEAPRLA TYSFLPFIEA FTKAAGVSVE TRDISLAGRI ISQFPEYLTE 

        70         80         90        100        110        120 
EQRQSDALAE LGEMAKTAEA NIIKLPNISA SIPQMTACIK ELQNQGYKLP DYPFDPQTDE 

       130        140        150        160        170        180 
EKDVRSRYDK VKGSAVNPVL REGNSDRRAP SAVKNYAKKH PHRMGEWSKD SKSHVAHMNE 

       190        200        210        220        230        240 
GDFYGSEKSV TSASEDTFKI VFESNGEQKV LKESVPVLAG EVVDAATMSK KQLQAFFEKE 

       250        260        270        280        290        300 
TVAAKEQGVL LSLHLKATMM KVSDPIMFGH AVRVFYKDVL EKHADLMKEI EFDPSNGIGD 

       310        320        330        340        350        360 
LYSKLDKLTA EQRDAIEVDM NAVYAKQPEL AMVNSHKGIT NLHVPSDIII DASMPAMIRD 

       370        380        390        400        410        420 
SGKMWDTNDS QQDAKAMIPD RSYAGVYQET IDFCRENGAF DPATMGTVPN VGLMAQKAEE 

       430        440        450        460        470        480 
YGSHDKTFEI PANGVVKVFN KAGDVVFEHK VEEGDIWRMC QVKDAPIRDW VKLAVNRSRL 

       490        500        510        520        530        540 
SGMPAVFWLD SNRAHDAQLI KKVEEYLKEH DTDGLDIQIM APVEATRHTL QRVKEGKDTI 

       550        560        570        580        590        600 
SVTGNVLRDY LTDLFPILEL GTSAKMLSIV PLMNGGGLFE TGAGGSAPKH VQQFVEENHL 

       610        620        630        640        650        660 
RWDSLGEFLA LAASLEHLSR TFDNKRALVL ADSLDLATAK FLEENKSPSR KVGEIDNRGS 

       670        680        690        700        710        720 
HFYLAMYWAE ALANQNEDAE LKERFSKLFE KLSGNEQAII NELNEIQGVK VDIGGYYQPN 

       730        740 
TDKVSAAMRP CSVLNETLGS L

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References

[1]"Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy."
Hou S., Saw J.H., Lee K.S., Freitas T.A., Belisle C., Kawarabayasi Y., Donachie S.P., Pikina A., Galperin M.Y., Koonin E.V., Makarova K.S., Omelchenko M.V., Sorokin A., Wolf Y.I., Li Q.X., Keum Y.S., Campbell S., Denery J. expand/collapse author list , Aizawa S., Shibata S., Malahoff A., Alam M.
Proc. Natl. Acad. Sci. U.S.A. 101:18036-18041(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-735 / DSM 15497 / L2-TR.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE017340 Genomic DNA. Translation: AAV82273.1.
RefSeqYP_155822.1. NC_006512.1.

3D structure databases

ProteinModelPortalQ5QZT7.
SMRQ5QZT7. Positions 7-741.
ModBaseSearch...

Protein-protein interaction databases

STRING283942.IL1433.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAV82273; AAV82273; IL1433.
GeneID3172011.
KEGGilo:IL1433.
PATRIC22140945. VBIIdiLoi21852_1435.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000240860.
KOK00031.
OMAFRMCQTK.
ProtClustDBCLSK867411.

Enzyme and pathway databases

BioCycILOI283942:GI0U-1465-MONOMER.

Family and domain databases

Gene3D3.40.718.10. 3 hits.
InterProIPR004436. Isocitrate_DH_NADP_mono.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PfamPF03971. IDH. 1 hit.
[Graphical view]
PIRSFPIRSF009407. IDH_monmr. 1 hit.
TIGRFAMsTIGR00178. monomer_idh. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ5QZT7_IDILO
AccessionPrimary (citable) accession number: Q5QZT7
Entry history
Integrated into UniProtKB/TrEMBL: January 4, 2005
Last sequence update: January 4, 2005
Last modified: May 1, 2013
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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