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Protein

Anthranilate phosphoribosyltransferase

Gene

trpD

Organism
Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Catalyzes the transfer of the phosphoribosyl group of 5-phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA).UniRule annotation

Catalytic activityi

N-(5-phospho-D-ribosyl)-anthranilate + diphosphate = anthranilate + 5-phospho-alpha-D-ribose 1-diphosphate.UniRule annotation

Cofactori

Mg2+UniRule annotationNote: Binds 2 magnesium ions per monomer.UniRule annotation

Pathwayi: L-tryptophan biosynthesis

This protein is involved in step 2 of the subpathway that synthesizes L-tryptophan from chorismate.UniRule annotation
Proteins known to be involved in the 5 steps of the subpathway in this organism are:
  1. Anthranilate synthase component 1 (trpE)
  2. Anthranilate phosphoribosyltransferase (trpD)
  3. no protein annotated in this organism
  4. Anthranilate isomerase (trpC)
  5. Tryptophan synthase alpha chain (trpA), Tryptophan synthase beta chain (trpB)
This subpathway is part of the pathway L-tryptophan biosynthesis, which is itself part of Amino-acid biosynthesis.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes L-tryptophan from chorismate, the pathway L-tryptophan biosynthesis and in Amino-acid biosynthesis.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei78 – 781Anthranilate 1; via carbonyl oxygenUniRule annotation
Binding sitei78 – 781Phosphoribosylpyrophosphate; via amide nitrogenUniRule annotation
Binding sitei86 – 861PhosphoribosylpyrophosphateUniRule annotation
Metal bindingi90 – 901Magnesium 1UniRule annotation
Binding sitei109 – 1091Anthranilate 1UniRule annotation
Binding sitei118 – 1181Phosphoribosylpyrophosphate; via amide nitrogenUniRule annotation
Binding sitei164 – 1641Anthranilate 2UniRule annotation
Metal bindingi222 – 2221Magnesium 2UniRule annotation
Metal bindingi223 – 2231Magnesium 1UniRule annotation
Metal bindingi223 – 2231Magnesium 2UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Amino-acid biosynthesis, Aromatic amino acid biosynthesis, Tryptophan biosynthesis

Keywords - Ligandi

Magnesium, Metal-binding

Enzyme and pathway databases

BioCyciILOI283942:GI0U-1762-MONOMER.
UniPathwayiUPA00035; UER00041.

Names & Taxonomyi

Protein namesi
Recommended name:
Anthranilate phosphoribosyltransferaseUniRule annotation (EC:2.4.2.18UniRule annotation)
Gene namesi
Name:trpDUniRule annotation
Ordered Locus Names:IL1753
OrganismiIdiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
Taxonomic identifieri283942 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesIdiomarinaceaeIdiomarina
Proteomesi
  • UP000001171 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 337337Anthranilate phosphoribosyltransferasePRO_0000227163Add
BLAST

Interactioni

Subunit structurei

Homodimer.UniRule annotation

Protein-protein interaction databases

STRINGi283942.IL1753.

Structurei

3D structure databases

ProteinModelPortaliQ5QX82.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni81 – 822Phosphoribosylpyrophosphate bindingUniRule annotation
Regioni88 – 914Phosphoribosylpyrophosphate bindingUniRule annotation
Regioni106 – 1149Phosphoribosylpyrophosphate bindingUniRule annotation

Sequence similaritiesi

Belongs to the anthranilate phosphoribosyltransferase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4107QYG. Bacteria.
COG0547. LUCA.
HOGENOMiHOG000230451.
KOiK00766.
OMAiHSGQAYQ.
OrthoDBiPOG091H01QX.

Family and domain databases

Gene3Di3.40.1030.10. 1 hit.
HAMAPiMF_00211. TrpD. 1 hit.
InterProiIPR005940. Anthranilate_Pribosyl_Tfrase.
IPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
[Graphical view]
PfamiPF02885. Glycos_trans_3N. 1 hit.
PF00591. Glycos_transf_3. 1 hit.
[Graphical view]
SUPFAMiSSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.
TIGRFAMsiTIGR01245. trpD. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5QX82-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKALQTLMSG ESLTQDQTRE FFQRLIKGEL NDIQVSAALI AMKMRGETPA
60 70 80 90 100
ELAGAAEAIL SAAKPFLRSD TTVIDSCGTG GDGSNTINIS TTAALVAASM
110 120 130 140 150
GLAVAKHGNR SVSSRSGSAD VLEALKLRVN LDPSDASTQL ADNGFCFLFA
160 170 180 190 200
PHYHPGIKHA MPVRQTLKTR TLFNLIGPLV NPARPDAQLL GVYSEEWVRP
210 220 230 240 250
MAETLQRLGV KRAMVVHGSG LDELALHGPT RVIELRNGEL NDYHVTPNDF
260 270 280 290 300
GVPSAPLDEL KGGDADFNAR ILEDILAGGG SPAQRHSVAM NVAALLYLSG
310 320 330
QYNDMKAATA ATMEHLDTGQ PLLHLRRVQD AQETYHV
Length:337
Mass (Da):36,115
Last modified:January 4, 2005 - v1
Checksum:i0BDBEDAC5A5363AF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017340 Genomic DNA. Translation: AAV82586.1.
RefSeqiWP_011234989.1. NC_006512.1.

Genome annotation databases

EnsemblBacteriaiAAV82586; AAV82586; IL1753.
KEGGiilo:IL1753.
PATRICi22141604. VBIIdiLoi21852_1759.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017340 Genomic DNA. Translation: AAV82586.1.
RefSeqiWP_011234989.1. NC_006512.1.

3D structure databases

ProteinModelPortaliQ5QX82.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi283942.IL1753.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAV82586; AAV82586; IL1753.
KEGGiilo:IL1753.
PATRICi22141604. VBIIdiLoi21852_1759.

Phylogenomic databases

eggNOGiENOG4107QYG. Bacteria.
COG0547. LUCA.
HOGENOMiHOG000230451.
KOiK00766.
OMAiHSGQAYQ.
OrthoDBiPOG091H01QX.

Enzyme and pathway databases

UniPathwayiUPA00035; UER00041.
BioCyciILOI283942:GI0U-1762-MONOMER.

Family and domain databases

Gene3Di3.40.1030.10. 1 hit.
HAMAPiMF_00211. TrpD. 1 hit.
InterProiIPR005940. Anthranilate_Pribosyl_Tfrase.
IPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
[Graphical view]
PfamiPF02885. Glycos_trans_3N. 1 hit.
PF00591. Glycos_transf_3. 1 hit.
[Graphical view]
SUPFAMiSSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.
TIGRFAMsiTIGR01245. trpD. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiTRPD_IDILO
AccessioniPrimary (citable) accession number: Q5QX82
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 7, 2006
Last sequence update: January 4, 2005
Last modified: September 7, 2016
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.