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Q5QVR3 (Q5QVR3_IDILO) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 53. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Glutamate decarboxylase putative EMBL AAV83088.1
Gene names
Name:gadB EMBL AAV83088.1
Ordered Locus Names:IL2256 EMBL AAV83088.1
OrganismIdiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) [Complete proteome] [HAMAP] EMBL AAV83088.1
Taxonomic identifier283942 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Idiomarinaceae › Idiomarina ›

Protein attributes

Sequence length549 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
   LigandPyridoxal phosphate RuleBase RU000382
   Molecular functionLyase RuleBase RU000382
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarboxylic acid metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncarboxy-lyase activity

Inferred from electronic annotation. Source: InterPro

pyridoxal phosphate binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q5QVR3 [UniParc].

Last modified January 4, 2005. Version 1.
Checksum: D4C420D99625E7A0

FASTA54961,069
        10         20         30         40         50         60 
MSPKTDIAEV NQESLYRIFT IPEAPDSTLG KIEKHLSENL MGFLGEHIVA REKPLQEIER 

        70         80         90        100        110        120 
DFDKSQIPEE PAFVSDHTEF LLDKLVAHSV HTASPRFIGH MTSALPYFLL PLAKLMVGLN 

       130        140        150        160        170        180 
QNLVKIETSK AFTPLERNVI GMMHHLVYQQ DAPFYNRWMH SAQHSLGAFC SGGTIANMTA 

       190        200        210        220        230        240 
LWVARNRLLQ ADGDFAGISA DGLAAGLQHY GYSKLTVVVS ERGHYSLSKA ADVLGIGRRN 

       250        260        270        280        290        300 
LVSVATDSDN RIRIDELRKT CEKIAKEGGK VLALVGVAGT TETGHIDPLD EMATVAEEVD 

       310        320        330        340        350        360 
AHFHVDAAWG GATLLSEQHR PLLAGIERAD SVTIDAHKQM YVPMGAGLVL FKNPALVKSI 

       370        380        390        400        410        420 
EYHAEYIIRQ GSKDLGSHTM EGSRAGMAMM VFSAMHVIGR RGYELLINNS IDKARYFSKL 

       430        440        450        460        470        480 
ISEQDDFEVI TEPELCILTY RFVPIKVKTV LDKATPEQLA RLTPHLNALT RYIQKRQRET 

       490        500        510        520        530        540 
GQSFVSRTKL TPAQYHHEPT VVFRVVLANP LTTNEMLQEV LCEQRKIAAK ATSLRGALHT 


EMRELGMLI

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References

[1]"Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy."
Hou S., Saw J.H., Lee K.S., Freitas T.A., Belisle C., Kawarabayasi Y., Donachie S.P., Pikina A., Galperin M.Y., Koonin E.V., Makarova K.S., Omelchenko M.V., Sorokin A., Wolf Y.I., Li Q.X., Keum Y.S., Campbell S., Denery J. expand/collapse author list , Aizawa S., Shibata S., Malahoff A., Alam M.
Proc. Natl. Acad. Sci. U.S.A. 101:18036-18041(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-735 / DSM 15497 / L2-TR.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE017340 Genomic DNA. Translation: AAV83088.1.
RefSeqYP_156637.1. NC_006512.1.

3D structure databases

ProteinModelPortalQ5QVR3.
ModBaseSearch...

Protein-protein interaction databases

STRING283942.IL2256.

Protocols and materials databases

DNASU3173263.
StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAV83088; AAV83088; IL2256.
GeneID3173263.
KEGGilo:IL2256.
PATRIC22142650. VBIIdiLoi21852_2266.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000282553.
KOK01580.
OMACHFHVDA.
ProtClustDBCLSK874231.

Enzyme and pathway databases

BioCycILOI283942:GI0U-2276-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMsTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ5QVR3_IDILO
AccessionPrimary (citable) accession number: Q5QVR3
Entry history
Integrated into UniProtKB/TrEMBL: January 4, 2005
Last sequence update: January 4, 2005
Last modified: May 1, 2013
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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