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Protein
Submitted name:

Glutamate decarboxylase putative

Gene

gadB

Organism
Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciILOI283942:GI0U-2271-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Glutamate decarboxylase putativeImported
Gene namesi
Name:gadBImported
Ordered Locus Names:IL2256Imported
OrganismiIdiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)Imported
Taxonomic identifieri283942 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesIdiomarinaceaeIdiomarina
ProteomesiUP000001171 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi283942.IL2256.

Structurei

3D structure databases

ProteinModelPortaliQ5QVR3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000282553.
KOiK01580.
OMAiALGAFCS.
OrthoDBiEOG6MSRZP.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5QVR3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSPKTDIAEV NQESLYRIFT IPEAPDSTLG KIEKHLSENL MGFLGEHIVA
60 70 80 90 100
REKPLQEIER DFDKSQIPEE PAFVSDHTEF LLDKLVAHSV HTASPRFIGH
110 120 130 140 150
MTSALPYFLL PLAKLMVGLN QNLVKIETSK AFTPLERNVI GMMHHLVYQQ
160 170 180 190 200
DAPFYNRWMH SAQHSLGAFC SGGTIANMTA LWVARNRLLQ ADGDFAGISA
210 220 230 240 250
DGLAAGLQHY GYSKLTVVVS ERGHYSLSKA ADVLGIGRRN LVSVATDSDN
260 270 280 290 300
RIRIDELRKT CEKIAKEGGK VLALVGVAGT TETGHIDPLD EMATVAEEVD
310 320 330 340 350
AHFHVDAAWG GATLLSEQHR PLLAGIERAD SVTIDAHKQM YVPMGAGLVL
360 370 380 390 400
FKNPALVKSI EYHAEYIIRQ GSKDLGSHTM EGSRAGMAMM VFSAMHVIGR
410 420 430 440 450
RGYELLINNS IDKARYFSKL ISEQDDFEVI TEPELCILTY RFVPIKVKTV
460 470 480 490 500
LDKATPEQLA RLTPHLNALT RYIQKRQRET GQSFVSRTKL TPAQYHHEPT
510 520 530 540
VVFRVVLANP LTTNEMLQEV LCEQRKIAAK ATSLRGALHT EMRELGMLI
Length:549
Mass (Da):61,069
Last modified:January 4, 2005 - v1
Checksum:iD4C420D99625E7A0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017340 Genomic DNA. Translation: AAV83088.1.
RefSeqiWP_011235483.1. NC_006512.1.
YP_156637.1. NC_006512.1.

Genome annotation databases

EnsemblBacteriaiAAV83088; AAV83088; IL2256.
KEGGiilo:IL2256.
PATRICi22142650. VBIIdiLoi21852_2266.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017340 Genomic DNA. Translation: AAV83088.1.
RefSeqiWP_011235483.1. NC_006512.1.
YP_156637.1. NC_006512.1.

3D structure databases

ProteinModelPortaliQ5QVR3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi283942.IL2256.

Protocols and materials databases

DNASUi3173263.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAV83088; AAV83088; IL2256.
KEGGiilo:IL2256.
PATRICi22142650. VBIIdiLoi21852_2266.

Phylogenomic databases

HOGENOMiHOG000282553.
KOiK01580.
OMAiALGAFCS.
OrthoDBiEOG6MSRZP.

Enzyme and pathway databases

BioCyciILOI283942:GI0U-2271-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-735 / DSM 15497 / L2-TRImported.

Entry informationi

Entry nameiQ5QVR3_IDILO
AccessioniPrimary (citable) accession number: Q5QVR3
Entry historyi
Integrated into UniProtKB/TrEMBL: January 4, 2005
Last sequence update: January 4, 2005
Last modified: May 27, 2015
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.