Q5QMZ9 (HOX29_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Homeobox-leucine zipper protein HOX29

Alternative name(s):
HD-ZIP protein HOX29
Homeodomain transcription factor HOX29
OSHB5
OsHox29

Gene names

Name:	HOX29
Ordered Locus Names:	Os01g0200300, LOC_Os01g10320
ORF Names:	B1015E06.7

Organism

Oryza sativa subsp. japonica (Rice)

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza

Protein attributes

Sequence length	868 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Function	Probable transcription factor that may be necessary for the proper patterning of vascular bundles. Ref.1
Subcellular location	Nucleus Probable.
Tissue specificity	Expressed in phloem. Ref.1 Ref.6
Sequence similarities	Belongs to the HD-ZIP homeobox family. Class III subfamily. Contains 1 homeobox DNA-binding domain. Contains 1 START domain.
Sequence caution	The sequence BAD73204.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence BAF04229.2 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Cellular component	Nucleus
Domain	Coiled coil Homeobox
Ligand	DNA-binding
Gene Ontology (GO)
Biological process	transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 868	868	Homeobox-leucine zipper protein HOX29		PRO_0000331730
Regions
	Domain	169 – 397	229	START
	DNA binding	9 – 72	64	Homeobox
	Coiled coil	64 – 106	43	Potential
	Compositional bias	157 – 160	4	Poly-Gln
	Compositional bias	640 – 644	5	Poly-Gly
	Compositional bias	651 – 654	4	Poly-Ser
Experimental info
	Sequence conflict	494	1	S → L in AK112091. Ref.5

Sequences

	Sequence		Length	Mass (Da)
	Q5QMZ9 [UniParc]. Last modified April 29, 2008. Version 2. Checksum: B03CD529A96B52DB	FASTA	868	93,957
	10 20 30 40 50 60 MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW 70 80 90 100 110 120 FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVYDHG RHGVAAAGMM 130 140 150 160 170 180 RRVPAFPPQA AAAAGHQLAT ATDTSCESVV TSGHHHQQQQ HNVVQPPPRD ASPAGLMSIA 190 200 210 220 230 240 EETLTEFLSK ATGTAVEWLQ MPGMKPGPDS IGIIAISHGC AGVAARACGL VGMEPAKVAE 250 260 270 280 290 300 ILKDRPLWLR DCRSMDVVNV LPAGANGTIE LLYMQLYAPT TLAPARDFWL LRYTSILDDG 310 320 330 340 350 360 SLVVCERSLS SKQGGPSMPL VQPFIRGEML PSGFLIRPSD VGGSVIHIVD HMDLEPWSVP 370 380 390 400 410 420 EVVRPLYESS AMVAQKISMA ALRYLRQVAH EDTRSVITGW GRQPAALRAL SQKLTRGFNE 430 440 450 460 470 480 ALNGLADDGW SVIESDGVDD VCISVNSSKV IGCNATFSSG LPIVSTGVLC AKASMLLQDV 490 500 510 520 530 540 SPPSLLQFLR EHRSQWADSN LDAFFASTMK PNFCNLPMSR LGGFSGQVIL PLAHTFEPEE 550 560 570 580 590 600 FLEVIKLGNA SNYQDTLVHR DLFLLQMYNG VEESSAGTCS ELIFAPIDAS FSDDSPLLPS 610 620 630 640 650 660 GFRIIPIDSP LDTSSPNCTL DLASTLEAAT PRSRISGVNG GGGGCAAAAA SSSSKAVMTI 670 680 690 700 710 720 AFQFAFDGHL QDSVAAMARQ YMRNIISSVQ RIAVALSSSR LVPPGAGAAA AQLSPVTPEA 730 740 750 760 770 780 ATLPRWICQS YRFHFGDELI KSVDANSSNE SILKAVWHHP SAILCCSLKA MPVFTFANQS 790 800 810 820 830 840 GLDMLETTLV ALQDMTLEKV FDDQGRKNLC TELPNIMEQG MACMEGGVCV SSVGRAASYE 850 860 KAVAWKVVDG DGGGAHCICF MFINWTFL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice." Itoh J., Hibara K., Sato Y., Nagato Y. Plant Physiol. 147:1960-1975(2008) [PubMed: 18567825] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, TISSUE SPECIFICITY. Strain: cv. Taichung 65. Tissue: Shoot.
[2]	"The genome sequence and structure of rice chromosome 1." Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M. , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T. Nature 420:312-316(2002) [PubMed: 12447438] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[3]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed: 16100779] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[4]	"The rice annotation project database (RAP-DB): 2008 update." The rice annotation project (RAP) Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed: 18089549] [Abstract] Cited for: GENOME REANNOTATION. Strain: cv. Nipponbare.
[5]	"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice." The rice full-length cDNA consortium Science 301:376-379(2003) [PubMed: 12869764] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 431-861. Strain: cv. Nipponbare.
[6]	"A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members." Agalou A., Purwantomo S., Oevernaes E., Johannesson H., Zhu X., Estiati A., de Kam R.J., Engstroem P., Slamet-Loedin I.H., Zhu Z., Wang M., Xiong L., Meijer A.H., Ouwerkerk P.B.F. Plant Mol. Biol. 66:87-103(2008) [PubMed: 17999151] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 468-560, TISSUE SPECIFICITY, GENE FAMILY, NOMENCLATURE. Strain: cv. Nipponbare.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AB374207 mRNA. Translation: BAG31403.1. AP003197 Genomic DNA. Translation: BAD73204.1. Sequence problems. AP008207 Genomic DNA. Translation: BAF04229.2. Sequence problems. AK112091 mRNA. No translation available. AY559050 mRNA. Translation: AAS68141.1.
RefSeq	NP_001042315.2. NM_001048850.1.
UniGene	Os.80691.
3D structure databases
HSSP	HSSP built from PDB template 1BW5 based on UniProtKB P50480.
ProteinModelPortal	Q5QMZ9.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4327348.
KEGG	osa:4327348.
Organism-specific databases
Gramene	Q5QMZ9.
Phylogenomic databases
HOGENOM	HBG604221.
Family and domain databases
InterPro	IPR001356. Homeobox. IPR009057. Homeodomain-like. IPR012287. Homeodomain-rel. IPR013978. MEKHLA. IPR023393. START-like_dom. IPR002913. START_lipid-bd. [Graphical view]
Gene3D	G3DSA:3.30.530.20. G3DSA:3.30.530.20. 1 hit. G3DSA:1.10.10.60. Homeodomain-rel. 1 hit.
Pfam	PF00046. Homeobox. 1 hit. PF08670. MEKHLA. 1 hit. PF01852. START. 1 hit. [Graphical view]
SMART	SM00389. HOX. 1 hit. SM00234. START. 1 hit. [Graphical view]
SUPFAM	SSF46689. Homeodomain_like. 1 hit.
PROSITE	PS00027. HOMEOBOX_1. False negative. PS50071. HOMEOBOX_2. 1 hit. PS50848. START. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

HOX29_ORYSJ

Accession

Primary (citable) accession number: Q5QMZ9
Secondary accession number(s): B2DDE8, Q0JPU9, Q6Q4Z8

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 29, 2008
Last sequence update:	April 29, 2008
Last modified:	December 14, 2011
This is version 52 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program