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Q5QJ60 (Q5QJ60_CYNDA) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length522 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding108 – 1147FAD PDB 4DNS
Nucleotide binding176 – 1772FAD PDB 4DNS
Nucleotide binding181 – 1855FAD PDB 4DNS
Nucleotide binding461 – 4655FAD PDB 4DNS

Sites

Binding site1191FAD PDB 4DNS
Binding site1911FAD; via amide nitrogen and carbonyl oxygen PDB 4DNS
Binding site2371FAD; via amide nitrogen PDB 4DNS
Binding site2421FAD; via amide nitrogen and carbonyl oxygen PDB 4DNS

Amino acid modifications

Glycosylation881N-linked (GlcNAc...) PDB 4DNS
Glycosylation3251N-linked (GlcNAc...) PDB 4DNS

Sequences

Sequence LengthMass (Da)Tools
Q5QJ60 [UniParc].

Last modified January 4, 2005. Version 1.
Checksum: 3C781F7FC155B33F

FASTA52257,413
        10         20         30         40         50         60 
MARSRAFAFA LLICAVAASC HVALSAPPPY AKQVERDFLT CLTKDIPPRQ LYAKSSPAYA 

        70         80         90        100        110        120 
SVWSSTVRNI KFLSDKTVKP LYIITPTNAS HIQAAVVCGR RHGMRIRVRS GGHDYEGLSY 

       130        140        150        160        170        180 
RSEKPEPFAV VDMNKMRAVS IDGKAATAWV DSGAQLGDLY YGIAKASPKL GFPAGVCTTI 

       190        200        210        220        230        240 
GVGGHFSGGG FGMLLRKYGT AADNVIDAKV VDAQGRLLDR KAMGEDHFWA IRGGGGESFG 

       250        260        270        280        290        300 
IVASWQVKLL PVPPKVTVFQ VHKGIKEGAI DLVTKWQTVA PALPDDLMIR IMAMGQGAMF 

       310        320        330        340        350        360 
EALYLGTCKD LVLLMTARFP ELGMNATHCK EMTWIESVPY IPMGPKGTVR DLLNRTSNIK 

       370        380        390        400        410        420 
AFGKYKSDYV LEPIPKSDWE KIFTWLVKPG AGVMIMDPYG GGIASVPESA TPFPRRSGVL 

       430        440        450        460        470        480 
FNIQYVVYWF GEGAAALPTQ WTRDIYDFMT PYVSKNPRQA YVNYRDLDLG VNQVVGNVST 

       490        500        510        520 
YASGKVWGEK YFKGNFERLA RTKGKIDPED YFRNEQSIPP LL 

« Hide

References

[1]"Molecular cloning and expression of an allergen BG60 from Bermuda grass (Cynodon dactylon)."
Chuang J.-G., Chow L.-P., Su S.-N.
Submitted (OCT-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Various cross-reactivity of the grass pollen group 4 allergens: crystallographic study of the Bermuda grass isoallergen Cyn d 4."
Huang T.H., Peng H.J., Su S.N., Liaw S.H.
Acta Crystallogr. D 68:1303-1310(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.15 ANGSTROMS) OF 26-522 IN COMPLEX WITH FAD, GLYCOSYLATION AT ASN-88 AND ASN-325.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY451241 mRNA. Translation: AAS02108.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4DNSX-ray2.15A/B26-522[»]
ProteinModelPortalQ5QJ60.
ModBaseSearch...
MobiDBSearch...

Protein family/group databases

Allergome819. Cyn d 4.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Organism-specific databases

GrameneQ5QJ60.

Family and domain databases

Gene3D3.30.43.10. 1 hit.
3.30.465.10. 1 hit.
InterProIPR012951. BBE.
IPR016169. CO_DH_flavot_FAD-bd_sub2.
IPR016166. FAD-bd_2.
IPR016167. FAD-bd_2_sub1.
IPR006094. Oxid_FAD_bind_N.
[Graphical view]
PfamPF08031. BBE. 1 hit.
PF01565. FAD_binding_4. 1 hit.
[Graphical view]
SUPFAMSSF56176. SSF56176. 1 hit.
PROSITEPS51387. FAD_PCMH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ5QJ60_CYNDA
AccessionPrimary (citable) accession number: Q5QJ60
Entry history
Integrated into UniProtKB/TrEMBL: January 4, 2005
Last sequence update: January 4, 2005
Last modified: March 19, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)