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Protein
Submitted name:

Ncor1 protein

Gene

Ncor1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Ncor1 proteinImported
Gene namesi
Name:Ncor1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:1349717. Ncor1.

Subcellular locationi

  • Nucleus SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusSAAS annotation

PTM / Processingi

Proteomic databases

PaxDbiQ5PRE9.

Expressioni

Gene expression databases

BgeeiQ5PRE9.
GenevisibleiQ5PRE9. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000018645.

Structurei

3D structure databases

ProteinModelPortaliQ5PRE9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini436 – 48752SANTInterPro annotationAdd
BLAST
Domaini623 – 67452SANTInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili179 – 21638Sequence analysisAdd
BLAST
Coiled coili508 – 54033Sequence analysisAdd
BLAST
Coiled coili1647 – 167832Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG1878. Eukaryota.
ENOG410YDXP. LUCA.
HOGENOMiHOG000113746.
HOVERGENiHBG052587.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR031557. N-CoR_GPS2_interact.
IPR001005. SANT/Myb.
IPR017884. SANT_dom.
[Graphical view]
PfamiPF15784. GPS2_interact. 1 hit.
PF00249. Myb_DNA-binding. 1 hit.
[Graphical view]
SMARTiSM00717. SANT. 2 hits.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 2 hits.
PROSITEiPS51293. SANT. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5PRE9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSSGYPPNQ GAFSTEQSRY PSHSVQYTFP STRHQQEFAV PDYRSSHIEV
60 70 80 90 100
SQASQLLQQQ QQQQQLRRRP SLLSEFHPGS DRPQERRTGY EQFHSGPSPV
110 120 130 140 150
DHDSLESKRP RLEPVSDAHF QRVSAAVLPL VHSLPEGLRS SADAKKDSAF
160 170 180 190 200
GSKHEAPSSP LAGQPCGDDQ NASPSKLSKE ELIQSMDRVD REIAKVEQQI
210 220 230 240 250
LKLKKKQQQL EEEAAKPPEP EKPVSPPPVE QKHRSIVQII YDENRKKAEE
260 270 280 290 300
AHKIFEGLGP KVELPLYNQP SDTKVYHENI KTNQVMRKKL ILFFKRRNHA
310 320 330 340 350
RKQREQKICQ RYDQLMEAWE KKVDRIENNP RRKAKESKTR EYYEKQFPEI
360 370 380 390 400
RKQREQQERF QRVGQRGAGL SATIARSEHE ISEIIDGLSE QENNEKQMRQ
410 420 430 440 450
LSVIPPMMFD AEQRRVKFIN MNGLMEDPMK VYKDRQFMNV WTDHEKEIFK
460 470 480 490 500
DKFIQHPKNF GLIASYLERK SVPDCVLYYY LTKKNENYKA LVRRNYGKRR
510 520 530 540 550
GRNQQIARPS QEEKVEEKEE DKAEKTEKKE EEKKDDEEKD DKEDSKETTK
560 570 580 590 600
EKDRTEATAE EPEEREQVTP RGRKTANSQG RRKGRVTRSM TSEAAAANAA
610 620 630 640 650
AAATEEPPPP LPPPPEPIST EPVETSRWTE EEMEVAKKGL VEHGRNWAAI
660 670 680 690 700
AKMVGTKSEA QCKNFYFNYK RRHNLDNLLQ QHKQKVSRAV VASRKPREER
710 720 730 740 750
DVSQCESVAS TVSAQEDEDI EASNEEENPE DSEAVPTTKP AERESVEAQV
760 770 780 790 800
TDSASAETAE PMDVDHEECG AEGSSVLDPP APTKADSVDP EMQVPENTAS
810 820 830 840 850
KGEGDAKERD LESTSEKTEA RDEDVVVAEQ IERPEPQSDD DSSATCSADE
860 870 880 890 900
GVDGEPERQR VFPMDAKPSL LTPPGSILIS SPIKPNPLDL PQLQHRAAVI
910 920 930 940 950
PPMVSCTPCN IPIGTPVSGY ALYQRHIKAM HESALLEEQR QRQEQVDLEC
960 970 980 990 1000
RSSTSPCSTS KSPNREWEVL QPAPHQVITN LPEGVRLPTT RPTRPPPPLI
1010 1020 1030 1040 1050
PSSKTTVASE KPSFIMGGSI SQGTPGTYLS SHNQAYPQEA PKPSVGSISL
1060 1070 1080 1090 1100
GLPRQQESTK AAPLTYIKQE EFSPRSQNSQ PEGLLVRAQH EGTAGAVQEG
1110 1120 1130 1140 1150
SITRGTPASK ISVETISSLR GSITQGTPAL PQAGIPTEAL VKGPVSRMPI
1160 1170 1180 1190 1200
EESSPEKVRE EAASKGHVIY EGKSGHILSY DNIKNAREGT RSPRTAHEMS
1210 1220 1230 1240 1250
LKRSYEAVEG SIKQGLICRA LPRGSPHSDL KERTVLSGSI MQGTPRATAE
1260 1270 1280 1290 1300
SFEDGLKYPK QIKRESPPIR AFEGAITKGK PYDGITTIKE MGRSIHEIPR
1310 1320 1330 1340 1350
QDILTQESRK TPEVVQSTRP IIEGSISQGT PIKFDNNSGQ SAIKHNVKSL
1360 1370 1380 1390 1400
ITGPSKLPRG MLEIVPENIK VVERGKYEDV KAGEPVRARH TSVVSSGPSV
1410 1420 1430 1440 1450
LRSTLHEAPK AQLSPGLYDD SSARRTPVSY QNTISRGSPM MNRTSDVSSS
1460 1470 1480 1490 1500
KSASHERKST LTPTQRESIP AKSPVPGVDP VVSHSPFDPH HRSSAAGEVY
1510 1520 1530 1540 1550
RSHLPTHLDP AMPFHRALDP AAAAYLLQRQ LSPTPGYPSQ YQLYAMENTR
1560 1570 1580 1590 1600
QTILNDYITS QQMQVNLRPD VTRGLSPREQ PLGLPYPATR GIIDLTNMPP
1610 1620 1630 1640 1650
TILVPHAGGT STPPMDRITY IPGTQVTFPP RPYNAASLSP GHPTHLAAAA
1660 1670 1680 1690 1700
SAERERERER EKERERERER ERERERERIA AAPADLYLRP GSEQPGRPGS
1710 1720 1730 1740 1750
HGYVRSPSPS VRTQETILQQ RPSVFQGTNG TSVITPLDPT AQLRIMPLPS
1760 1770 1780 1790 1800
GGPSISQGLP ASRYNTAADA LAALVDAAAS APQMDVSKTK ESKHEAARLE
1810 1820 1830 1840 1850
ENLRSRSAAV SEQQQLEQKN LEVEKRSVQC VCTSSALPSG KAQPHASVVY
1860 1870 1880 1890 1900
SEAGKDKGPP PKSRYEEELR TRGKTTITAA NFIDVIITRQ IASDKDARER
1910 1920 1930 1940 1950
GSQSSDSSSS LSSHRYETAS DAIEVISPAS SPAPPQEKPQ AYQPDMVKAN
1960 1970 1980 1990 2000
QAENESTRQY EGPLHHYRSQ QESPSPQQQP PLPPSSQSEG MGQVPRTHRL
2010 2020 2030 2040 2050
ITLADHICQI ITQDFARNQV PSQPSTSTFQ TSPSALSSTP VRTKTSSRYS
2060 2070 2080 2090 2100
PESQSQTVLH PRPGPRVSPE NLVDKSRGSR PGKSPERSHI PSEPYEPISP
2110 2120 2130 2140 2150
PQGPAVHEKQ DSMLLLSQRG VDPAEQRSDS RSPGSISYLP SFFTKLESTS
2160 2170 2180 2190 2200
PMVKSKKQEI FRKLNSSGGG DSDMAAAQPG TEIFNLPAVT TSGAVSSRSH
2210 2220 2230 2240 2250
SFADPASNLG LEDIIRKALM GSFDDKVEDH GVVMSHPVGI MPGSASTSVV
2260 2270 2280 2290 2300
TSSEARRDEG EPSPHAGVCK PKLINKSNSR KSKSPIPGQS YLGTERPSSV
2310 2320 2330 2340 2350
SSVHSEGDYH RQTPGWAWED RPSSTGSTQF PYNPLTIRML SSTPPTQIAC
2360 2370 2380
APSAITQAAP HQQNRIWERE PAPLLSAQYE TLSDSDD
Length:2,387
Mass (Da):264,125
Last modified:January 4, 2005 - v1
Checksum:i70C0E85EEBB5E63F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC086657 mRNA. Translation: AAH86657.1.
RefSeqiNP_035438.3. NM_011308.3.
UniGeneiMm.271814.
Mm.460227.

Genome annotation databases

GeneIDi20185.
UCSCiuc007jix.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC086657 mRNA. Translation: AAH86657.1.
RefSeqiNP_035438.3. NM_011308.3.
UniGeneiMm.271814.
Mm.460227.

3D structure databases

ProteinModelPortaliQ5PRE9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000018645.

Proteomic databases

PaxDbiQ5PRE9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi20185.
UCSCiuc007jix.2. mouse.

Organism-specific databases

CTDi9611.
MGIiMGI:1349717. Ncor1.

Phylogenomic databases

eggNOGiKOG1878. Eukaryota.
ENOG410YDXP. LUCA.
HOGENOMiHOG000113746.
HOVERGENiHBG052587.

Miscellaneous databases

ChiTaRSiNcor1. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiQ5PRE9.
GenevisibleiQ5PRE9. MM.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR031557. N-CoR_GPS2_interact.
IPR001005. SANT/Myb.
IPR017884. SANT_dom.
[Graphical view]
PfamiPF15784. GPS2_interact. 1 hit.
PF00249. Myb_DNA-binding. 1 hit.
[Graphical view]
SMARTiSM00717. SANT. 2 hits.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 2 hits.
PROSITEiPS51293. SANT. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6Imported.
    Tissue: BrainImported.

Entry informationi

Entry nameiQ5PRE9_MOUSE
AccessioniPrimary (citable) accession number: Q5PRE9
Entry historyi
Integrated into UniProtKB/TrEMBL: January 4, 2005
Last sequence update: January 4, 2005
Last modified: July 6, 2016
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.