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Protein
Submitted name:

RALY heterogeneous nuclear ribonucleoprotein

Gene

Raly

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
RALY heterogeneous nuclear ribonucleoproteinImported
Submitted name:
RCG37353, isoform CRA_bImported
Submitted name:
RNA binding protein, autoantigenic (HnRNP-associated with lethal yellow homolog (Mouse))Imported
Gene namesi
Name:RalyImported
ORF Names:rCG_37353Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 3

Organism-specific databases

RGDi1307228. Raly.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiENSRNOG00000017405.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000023429.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini21 – 92RRMInterPro annotationAdd BLAST72

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili178 – 198Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG0118. Eukaryota.
COG0724. LUCA.
GeneTreeiENSGT00390000006718.
HOGENOMiHOG000231958.
HOVERGENiHBG002302.
KOiK12895.

Family and domain databases

CDDicd12604. RRM_RALY. 1 hit.
InterProiView protein in InterPro
IPR017347. hnRNP_C.
IPR034502. RALY_RRM.
IPR035979. RBD_domain_sf.
IPR000504. RRM_dom.
PfamiView protein in Pfam
PF00076. RRM_1. 1 hit.
PIRSFiPIRSF037992. hnRNP-C_Raly. 1 hit.
SMARTiView protein in SMART
SM00360. RRM. 1 hit.
SUPFAMiSSF54928. SSF54928. 1 hit.
PROSITEiView protein in PROSITE
PS50102. RRM. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5PQR0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLKIQTSNV TNKNDPKSIN SRVFIGNLNT AVVKKSDVET IFSKYGRVAG
60 70 80 90 100
CSVHKGYAFV QYANERHARA AVLGENGRVL AGQTLDINMA GEPKPNRPKG
110 120 130 140 150
LKRAATAIYR LFDYRGRLSP VPVPRAVPVK RPRVTVPLVR RVKTTIPVKL
160 170 180 190 200
FARSTAISTG SAKIKLKSSE LQTIKTELTQ IKSNIDALLG RLEQIAEEQK
210 220 230 240 250
ANPDGKKKGD SSSGGGGGSS SGGGGSGNVG SGGSGGSGSS SSRPPAPQED
260 270 280 290
TASEAGTPQG EVQTRDDGDE EGLLTHSEEE LEHSQDTDAE DGALQ
Length:295
Mass (Da):31,050
Last modified:January 4, 2005 - v1
Checksum:iFF12B9B5970FD58F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC135822 Genomic DNA. No translation available.
BC087074 mRNA. Translation: AAH87074.1.
CH474050 Genomic DNA. Translation: EDL85947.1.
CH474050 Genomic DNA. Translation: EDL85948.1.
RefSeqiNP_001011958.1. NM_001011958.1.
XP_008760538.1. XM_008762316.2.
XP_008760539.1. XM_008762317.2.
UniGeneiRn.162714.

Genome annotation databases

EnsembliENSRNOT00000080485; ENSRNOP00000074887; ENSRNOG00000017405.
GeneIDi296301.
KEGGirno:296301.
UCSCiRGD:1307228. rat.

Similar proteinsi

Entry informationi

Entry nameiQ5PQR0_RAT
AccessioniPrimary (citable) accession number: Q5PQR0
Entry historyiIntegrated into UniProtKB/TrEMBL: January 4, 2005
Last sequence update: January 4, 2005
Last modified: December 20, 2017
This is version 108 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported