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Protein

39S ribosomal protein L38, mitochondrial

Gene

Mrpl38

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-RNO-5389840. Mitochondrial translation elongation.
R-RNO-5419276. Mitochondrial translation termination.

Names & Taxonomyi

Protein namesi
Recommended name:
39S ribosomal protein L38, mitochondrial
Short name:
L38mt
Short name:
MRP-L38
Gene namesi
Name:Mrpl38
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 10

Organism-specific databases

RGDi1311180. Mrpl38.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 2626MitochondrionSequence analysisAdd
BLAST
Chaini27 – 38035439S ribosomal protein L38, mitochondrialPRO_0000261655Add
BLAST

Proteomic databases

PaxDbiQ5PQN9.
PRIDEiQ5PQN9.

Expressioni

Gene expression databases

GenevisibleiQ5PQN9. RN.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000011328.

Structurei

3D structure databases

ProteinModelPortaliQ5PQN9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili98 – 12326Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coil, Transit peptide

Phylogenomic databases

eggNOGiKOG3346. Eukaryota.
COG1881. LUCA.
GeneTreeiENSGT00840000129951.
HOGENOMiHOG000231107.
HOVERGENiHBG054933.
InParanoidiQ5PQN9.
KOiK17419.
OMAiFSTLDFY.
OrthoDBiEOG72C50C.
PhylomeDBiQ5PQN9.
TreeFamiTF315074.

Family and domain databases

Gene3Di3.90.280.10. 1 hit.
InterProiIPR008914. PtdEtn-bd_prot_PEBP.
[Graphical view]
PfamiPF01161. PBP. 1 hit.
[Graphical view]
SUPFAMiSSF49777. SSF49777. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q5PQN9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAPWWRAAF SVTGRCRGIS TSASLSRRTP PLGPMPNEDI DVSNLERLEK
60 70 80 90 100
YRSFERYRRR AEQEAHAPHW WRTYREYFLK ETDPKDRINI GLPPPRVSRT
110 120 130 140 150
QKLQERKRFL QELRANSEEE RAARLRTASI PLEAVRAEWE RTCGPYHKQR
160 170 180 190 200
LAEYYGLYRD LFHGATFVPW VPLHVAYALG EEDLIPVYHG NEVTPTEASQ
210 220 230 240 250
APEVTYEADK DSLWTLLFIN LDGHLLEPDA EYLHWLVTNI PSNRVAEGQE
260 270 280 290 300
SCPYLPPFPA RGSGFHRFAF LLFKQDKPIN FSEDTRPSPC YQLAQRTFHT
310 320 330 340 350
LDFYKKHQEA MTPAGLAFFQ CRWDDSVTHT FHQLLDMREP VFEFVRPPPY
360 370 380
HPKQKRFPHQ QPLRYLDRYR DSHEPTYGIY
Length:380
Mass (Da):44,838
Last modified:November 28, 2006 - v2
Checksum:iFE1CEF8075989993
GO

Sequence cautioni

The sequence AAH87096.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC087096 mRNA. Translation: AAH87096.1. Different initiation.
RefSeqiNP_001009369.2. NM_001009369.2.
XP_008766594.1. XM_008768372.1.
UniGeneiRn.34217.

Genome annotation databases

EnsembliENSRNOT00000011328; ENSRNOP00000011328; ENSRNOG00000008256.
GeneIDi303685.
KEGGirno:303685.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC087096 mRNA. Translation: AAH87096.1. Different initiation.
RefSeqiNP_001009369.2. NM_001009369.2.
XP_008766594.1. XM_008768372.1.
UniGeneiRn.34217.

3D structure databases

ProteinModelPortaliQ5PQN9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000011328.

Proteomic databases

PaxDbiQ5PQN9.
PRIDEiQ5PQN9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000011328; ENSRNOP00000011328; ENSRNOG00000008256.
GeneIDi303685.
KEGGirno:303685.

Organism-specific databases

CTDi64978.
RGDi1311180. Mrpl38.

Phylogenomic databases

eggNOGiKOG3346. Eukaryota.
COG1881. LUCA.
GeneTreeiENSGT00840000129951.
HOGENOMiHOG000231107.
HOVERGENiHBG054933.
InParanoidiQ5PQN9.
KOiK17419.
OMAiFSTLDFY.
OrthoDBiEOG72C50C.
PhylomeDBiQ5PQN9.
TreeFamiTF315074.

Enzyme and pathway databases

ReactomeiR-RNO-5389840. Mitochondrial translation elongation.
R-RNO-5419276. Mitochondrial translation termination.

Miscellaneous databases

NextBioi651892.
PROiQ5PQN9.

Gene expression databases

GenevisibleiQ5PQN9. RN.

Family and domain databases

Gene3Di3.90.280.10. 1 hit.
InterProiIPR008914. PtdEtn-bd_prot_PEBP.
[Graphical view]
PfamiPF01161. PBP. 1 hit.
[Graphical view]
SUPFAMiSSF49777. SSF49777. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. NIH - Mammalian Gene Collection (MGC) project
    Submitted (DEC-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Heart.

Entry informationi

Entry nameiRM38_RAT
AccessioniPrimary (citable) accession number: Q5PQN9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: November 28, 2006
Last modified: May 11, 2016
This is version 71 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.