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Protein

Transcription elongation factor A protein-like 1

Gene

Tceal1

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

May be involved in transcriptional regulation. Modulates various viral and cellular promoters in a promoter context-dependent manner. Does not bind DNA directly (By similarity).By similarity

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription elongation factor A protein-like 1
Short name:
TCEA-like protein 1
Alternative name(s):
Transcription elongation factor S-II protein-like 1
Gene namesi
Name:Tceal1
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome X

Organism-specific databases

RGDi1549724. Tceal1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 165165Transcription elongation factor A protein-like 1PRO_0000239205Add
BLAST

Proteomic databases

PaxDbiQ5PPP3.
PRIDEiQ5PPP3.

Expressioni

Gene expression databases

GenevisibleiQ5PPP3. RN.

Interactioni

Protein-protein interaction databases

BioGridi257245. 1 interaction.
STRINGi10116.ENSRNOP00000049958.

Family & Domainsi

Sequence similaritiesi

Belongs to the TFS-II family. TFA subfamily.Curated

Phylogenomic databases

eggNOGiENOG410JCA0. Eukaryota.
ENOG41115IA. LUCA.
GeneTreeiENSGT00730000111084.
HOGENOMiHOG000231344.
HOVERGENiHBG094029.
InParanoidiQ5PPP3.
OMAiERPPMEQ.
OrthoDBiEOG757D0N.
PhylomeDBiQ5PPP3.
TreeFamiTF336871.

Family and domain databases

InterProiIPR010370. TCEAL1.
IPR021156. TF_A-like/BEX-like.
[Graphical view]
PANTHERiPTHR14754:SF12. PTHR14754:SF12. 1 hit.
PfamiPF04538. BEX. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5PPP3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MENSHNESEE QPQSTPKVEE EQPAVEQSPE NQCSEDDQSS EDLSSEEQSS
60 70 80 90 100
DEEFFPEELL PELLPEMLLC EDRPPQECLP QKNAFEDRIP MEQPPCGIGK
110 120 130 140 150
HKLEEGSFKE RLARSRPQFR GDIHGRNLSN EEMIRAADEL EEMKRVRNKL
160
MIMHWKAKRS RPYPI
Length:165
Mass (Da):19,262
Last modified:January 4, 2005 - v1
Checksum:i6DCDBF4D1BF2B341
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC087575 mRNA. Translation: AAH87575.1.
RefSeqiNP_001009675.1. NM_001009675.1.
XP_008771635.1. XM_008773413.1.
XP_008771636.1. XM_008773414.1.
UniGeneiRn.41329.

Genome annotation databases

EnsembliENSRNOT00000044372; ENSRNOP00000049958; ENSRNOG00000002387.
GeneIDi302593.
KEGGirno:302593.
UCSCiRGD:1549724. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC087575 mRNA. Translation: AAH87575.1.
RefSeqiNP_001009675.1. NM_001009675.1.
XP_008771635.1. XM_008773413.1.
XP_008771636.1. XM_008773414.1.
UniGeneiRn.41329.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi257245. 1 interaction.
STRINGi10116.ENSRNOP00000049958.

Proteomic databases

PaxDbiQ5PPP3.
PRIDEiQ5PPP3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000044372; ENSRNOP00000049958; ENSRNOG00000002387.
GeneIDi302593.
KEGGirno:302593.
UCSCiRGD:1549724. rat.

Organism-specific databases

CTDi9338.
RGDi1549724. Tceal1.

Phylogenomic databases

eggNOGiENOG410JCA0. Eukaryota.
ENOG41115IA. LUCA.
GeneTreeiENSGT00730000111084.
HOGENOMiHOG000231344.
HOVERGENiHBG094029.
InParanoidiQ5PPP3.
OMAiERPPMEQ.
OrthoDBiEOG757D0N.
PhylomeDBiQ5PPP3.
TreeFamiTF336871.

Miscellaneous databases

NextBioi649899.
PROiQ5PPP3.

Gene expression databases

GenevisibleiQ5PPP3. RN.

Family and domain databases

InterProiIPR010370. TCEAL1.
IPR021156. TF_A-like/BEX-like.
[Graphical view]
PANTHERiPTHR14754:SF12. PTHR14754:SF12. 1 hit.
PfamiPF04538. BEX. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Ovary.

Entry informationi

Entry nameiTCAL1_RAT
AccessioniPrimary (citable) accession number: Q5PPP3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2006
Last sequence update: January 4, 2005
Last modified: May 11, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.