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Protein
Submitted name:

LIM domain only 4

Gene

Lmo4

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
LIM domain only 4Imported
Submitted name:
LIM domain only 4, isoform CRA_aImported
Submitted name:
Protein Lmo4Imported
Gene namesi
Name:Lmo4Imported
ORF Names:rCG_28539Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 2

Organism-specific databases

RGDi1305670. Lmo4.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Expressioni

Gene expression databases

BgeeiENSRNOG00000009205.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000062436.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini21 – 83LIM zinc-bindingInterPro annotationAdd BLAST63
Domaini85 – 147LIM zinc-bindingInterPro annotationAdd BLAST63

Sequence similaritiesi

Contains 2 LIM zinc-binding domains.UniRule annotation

Keywords - Domaini

LIM domainUniRule annotation

Phylogenomic databases

eggNOGiKOG0490. Eukaryota.
ENOG410YIJ3. LUCA.
GeneTreeiENSGT00720000108603.
HOGENOMiHOG000232175.
HOVERGENiHBG054231.
OMAiTIPANDY.
TreeFamiTF351071.

Family and domain databases

Gene3Di2.10.110.10. 2 hits.
InterProiIPR001781. Znf_LIM.
[Graphical view]
PfamiPF00412. LIM. 2 hits.
[Graphical view]
SMARTiSM00132. LIM. 2 hits.
[Graphical view]
PROSITEiPS00478. LIM_DOMAIN_1. 2 hits.
PS50023. LIM_DOMAIN_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5PPG8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVNPGSSSQP PPVTAGSLSW KRCAGCGGKI ADRFLLYAMD SYWHSRCLKC
60 70 80 90 100
SCCQAQLGDI GTSCYTKSGM ILCRNDYIRL FGNSGACSAC GQSIPASELV
110 120 130 140 150
MRAQGNVYHL KCFTCSTCRN RLVPGDRFHY INGSLFCEHD RPTALINGHL
160
NSLQSNPLLP DQKVC
Length:165
Mass (Da):17,994
Last modified:January 4, 2005 - v1
Checksum:iC8AC295144AD7787
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07013683 Genomic DNA. No translation available.
AABR07013684 Genomic DNA. No translation available.
BC087700 mRNA. Translation: AAH87700.1.
CH473952 Genomic DNA. Translation: EDL82371.1.
CH473952 Genomic DNA. Translation: EDL82372.1.
CH473952 Genomic DNA. Translation: EDL82373.1.
RefSeqiNP_001009708.1. NM_001009708.1.
XP_006233500.1. XM_006233438.2.
UniGeneiRn.2517.

Genome annotation databases

EnsembliENSRNOT00000067502; ENSRNOP00000062436; ENSRNOG00000009205.
ENSRNOT00000077221; ENSRNOP00000074440; ENSRNOG00000009205.
ENSRNOT00000088618; ENSRNOP00000075489; ENSRNOG00000009205.
GeneIDi362051.
KEGGirno:362051.
UCSCiRGD:1305670. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07013683 Genomic DNA. No translation available.
AABR07013684 Genomic DNA. No translation available.
BC087700 mRNA. Translation: AAH87700.1.
CH473952 Genomic DNA. Translation: EDL82371.1.
CH473952 Genomic DNA. Translation: EDL82372.1.
CH473952 Genomic DNA. Translation: EDL82373.1.
RefSeqiNP_001009708.1. NM_001009708.1.
XP_006233500.1. XM_006233438.2.
UniGeneiRn.2517.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000062436.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000067502; ENSRNOP00000062436; ENSRNOG00000009205.
ENSRNOT00000077221; ENSRNOP00000074440; ENSRNOG00000009205.
ENSRNOT00000088618; ENSRNOP00000075489; ENSRNOG00000009205.
GeneIDi362051.
KEGGirno:362051.
UCSCiRGD:1305670. rat.

Organism-specific databases

CTDi8543.
RGDi1305670. Lmo4.

Phylogenomic databases

eggNOGiKOG0490. Eukaryota.
ENOG410YIJ3. LUCA.
GeneTreeiENSGT00720000108603.
HOGENOMiHOG000232175.
HOVERGENiHBG054231.
OMAiTIPANDY.
TreeFamiTF351071.

Gene expression databases

BgeeiENSRNOG00000009205.

Family and domain databases

Gene3Di2.10.110.10. 2 hits.
InterProiIPR001781. Znf_LIM.
[Graphical view]
PfamiPF00412. LIM. 2 hits.
[Graphical view]
SMARTiSM00132. LIM. 2 hits.
[Graphical view]
PROSITEiPS00478. LIM_DOMAIN_1. 2 hits.
PS50023. LIM_DOMAIN_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ5PPG8_RAT
AccessioniPrimary (citable) accession number: Q5PPG8
Entry historyi
Integrated into UniProtKB/TrEMBL: January 4, 2005
Last sequence update: January 4, 2005
Last modified: November 30, 2016
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.