Reviewed, UniProtKB/Swiss-Prot Q5PP28 (NAC3_ARATH)

Names and origin

Protein names

Recommended name:
    NAC domain-containing protein 3
      Short name=ANAC003

Gene names

Name:	NAC003
Ordered Locus Names:	At1g02220
ORF Names:	T7I23.18

Organism

Arabidopsis thaliana (Mouse-ear cress) [Complete proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

Protein attributes

Sequence length	394 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Subcellular location	Nucleus Probable.
Domain	The NAC domain includes a DNA binding domain and a dimerization domain.
Sequence similarities	Contains 1 NAC domain.
Sequence caution	The sequence AAC24382.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Cellular component	Nucleus
Ligand	DNA-binding
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	regulation of transcription Inferred from electronic annotation. Source: UniProtKB-KW transcription Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 394	394	NAC domain-containing protein 3		PRO_0000376611
Regions
	Domain	3 – 147	145	NAC
	DNA binding	104 – 153	50	By similarity
	Compositional bias	154 – 161	8	Poly-Ser

Sequences

	Sequence		Length	Mass (Da)
	Q5PP28-1 [UniParc]. Last modified January 4, 2005. Version 1. Checksum: 8F9B26A7AD33F732	FASTA	394	45,153
	10 20 30 40 50 60 METPVGLRFC PTDEEIVVDY LWPKNSDRDT SHVDRFINTV PVCRLDPWEL PCQSRIKLKD 70 80 90 100 110 120 VAWCFFRPKE NKYGRGDQQM RKTKSGFWKS TGRPKPIMRN RQQIGEKKIL MFYTSKESKS 130 140 150 160 170 180 DWVIHEYHGF SHNQMMMTYT LCKVMFNGGM REKSSSSPSS SGVSGIEQSR RDSLIPQLVN 190 200 210 220 230 240 NSEGSSLHRE DPSQFGDVLQ EAPIEDAKLT EELVKWLMND EDDAQIEDAI PIEEWETWLN 250 260 270 280 290 300 DIDDAKEKSI MFMHDNRSDY RPPNSLTGVF SDDVSSDDND SDLLTPKTNS IQTSSTCDSF 310 320 330 340 350 360 GSSNHRIDQI KDLQESPTST INLVSLTQEV SQALITSIDT AEKKKNPYDD AQGTEIGEHK 370 380 390 LGQETIKKKR AGFFHRMIQK FVKKIHLCSS ISRT

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana." Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W. Nature 408:816-820(2000) [PubMed: 11130712] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	"Arabidopsis ORF clones." Kim C.J., Chen H., Cheuk R.F., Shinn P., Ecker J.R. Submitted (MAY-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia.
[3]	"ORF cloning and analysis of Arabidopsis transcription factor genes." Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., Takiguchi Y., Takagi M. Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
[4]	"Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana." Ooka H., Satoh K., Doi K., Nagata T., Otomo Y., Murakami K., Matsubara K., Osato N., Kawai J., Carninci P., Hayashizaki Y., Suzuki K., Kojima K., Takahara Y., Yamamoto K., Kikuchi S. DNA Res. 10:239-247(2003) [PubMed: 15029955] [Abstract] Cited for: GENE FAMILY, NOMENCLATURE.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBLGenBankDDBJ	U89959 Genomic DNA. Translation: AAC24382.1. Sequence problems. BT020269 mRNA. Translation: AAV84490.1. BT022063 mRNA. Translation: AAY25475.1. AB493423 mRNA. Translation: BAH30261.1.
IPI	IPI00532928.
RefSeq	NP_171725.1.
UniGene	At.70442
3D structure databases
HSSP	HSSP built from PDB template 1UT7 based on UniProtKB Q9C932.
ModBase	Search...
Genome annotation databases
GeneID	839476.
GenomeReviews	Gene locus AT1G02220 in contig CT485782_GR.
KEGG	ath:AT1G02220.
NMPDR	fig|3702.1.peg.341.
Organism-specific databases
TAIR	At1g02220.
Gene expression databases
Genevestigator	Q5PP28.
Family and domain databases
InterPro	IPR003441. NAM. [Graphical view]
Pfam	PF02365. NAM. 1 hit. [Graphical view]
PROSITE	PS51005. NAC. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

NAC3_ARATH

Accession

Primary (citable) accession number: Q5PP28
Secondary accession number(s): O81912

Entry history

Integrated into UniProtKB/Swiss-Prot:	June 16, 2009
Last sequence update:	January 4, 2005
Last modified:	November 24, 2009
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

PPAP (Plant Proteome Annotation Project)