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Q5NYD8

- Q5NYD8_AROAE

UniProt

Q5NYD8 - Q5NYD8_AROAE

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ebA6655

Organism
Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1))
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciAARO76114:GJTA-3853-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
ORF Names:ebA6655Imported
OrganismiAromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1))Imported
Taxonomic identifieri76114 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaRhodocyclalesRhodocyclaceaeAromatoleum
ProteomesiUP000006552: Chromosome

PTM / Processingi

Proteomic databases

PRIDEiQ5NYD8.

Interactioni

Protein-protein interaction databases

STRINGi76114.ebA6655.

Structurei

3D structure databases

ProteinModelPortaliQ5NYD8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiVAFTEWT.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5NYD8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKRSESDKAR AGDPLARYRA MRDFGTTPEP GGDTVAVKAG DGPTFTVQRH
60 70 80 90 100
AARRLHYDFR LELDGVLKSW AAPKGPSLDP SERRLAVETE DHPLDYGDFE
110 120 130 140 150
GVIPARQYGA GEVVLWDRGR WSTDNGQDWT HRMPQLVTAL AALQLDDSWL
160 170 180 190 200
DGEIVVNGDD GLPDFQALQN AFAQGASGRI VYYLFDAPWL SGDELAALPL
210 220 230 240 250
VERKHRLAAA LAGGEGGASV YSEHFAGDVG AALEQACHLG LEGLIGKRGD
260 270 280 290 300
ARYGSGRSCS WIKLKCRPRQ EFVIGGYTEP GGAREGFGAL LVGLYDDAGA
310 320 330 340 350
LNYAGKVGTG FDRETLERLA RQLAALERKD SPFARKPRGA GQHWVRPALV
360 370 380 390 400
AEVEYAGWTR DNLLRQAAFA GLREDKPANT VQDEIPLSPQ VAAEMEQPPS
410 420 430 440 450
QAKSPRRQKK KPSTERGGPA KPRASSESGE VRVAGIVITH PERVVWPDAG
460 470 480 490 500
LTKADLARYY EDIAPWLLPH VASRPLSLLR CPDGSEAECF FQRHMGQERP
510 520 530 540 550
DGVESFIWEA SSKDRRSYLY VTSLEGVIGM VQRGVVEFHT WGSTMPRADR
560 570 580 590 600
PDRITIDLDP GPELAWARVV EAAQLVRGLL GELGIASFVK TTGGKGLHVV
610 620 630 640 650
VPLRRGPQWA DVKRFAKAVA THLARILPDR FTANMARNQR AGRIFVDYLR
660 670 680 690 700
NDAGASAICA YAARARPGAP VSTPLAWDEL GPELKPGAFT VLTVADRLAR
710 720 730 740
LREDPWRDYA KQRFVLTGKM WEALGETPPR KTPNQAEQRH SD
Length:742
Mass (Da):81,444
Last modified:January 4, 2005 - v1
Checksum:i2E1A1DB34F7940B3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR555306 Genomic DNA. Translation: CAI09926.1.
RefSeqiYP_160827.1. NC_006513.1.

Genome annotation databases

EnsemblBacteriaiCAI09926; CAI09926; ebA6655.
GeneIDi3179186.
KEGGieba:ebA6655.
PATRICi20973813. VBIAroAro98752_3824.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR555306 Genomic DNA. Translation: CAI09926.1 .
RefSeqi YP_160827.1. NC_006513.1.

3D structure databases

ProteinModelPortali Q5NYD8.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 76114.ebA6655.

Proteomic databases

PRIDEi Q5NYD8.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAI09926 ; CAI09926 ; ebA6655 .
GeneIDi 3179186.
KEGGi eba:ebA6655.
PATRICi 20973813. VBIAroAro98752_3824.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi VAFTEWT.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci AARO76114:GJTA-3853-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1."
    Rabus R., Kube M., Heider J., Beck A., Heitmann K., Widdel F., Reinhardt R.
    Arch. Microbiol. 183:27-36(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: EbN1Imported.

Entry informationi

Entry nameiQ5NYD8_AROAE
AccessioniPrimary (citable) accession number: Q5NYD8
Entry historyi
Integrated into UniProtKB/TrEMBL: January 4, 2005
Last sequence update: January 4, 2005
Last modified: October 1, 2014
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3