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Q5NYD8 (Q5NYD8_AROAE) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 58. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
ATP-dependent DNA ligase EMBL CAI09926.1
Gene names
Ordered Locus Names:AZOSEA38010
ORF Names:ebA6655 EMBL CAI09926.1
OrganismAromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)) [Complete proteome] [HAMAP]
Taxonomic identifier76114 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Rhodocyclales › Rhodocyclaceae › Aromatoleum ›

Protein attributes

Sequence length742 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL CAI09926.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

DNA primase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q5NYD8 [UniParc].

Last modified January 4, 2005. Version 1.
Checksum: 2E1A1DB34F7940B3

FASTA74281,444
        10         20         30         40         50         60 
MKRSESDKAR AGDPLARYRA MRDFGTTPEP GGDTVAVKAG DGPTFTVQRH AARRLHYDFR 

        70         80         90        100        110        120 
LELDGVLKSW AAPKGPSLDP SERRLAVETE DHPLDYGDFE GVIPARQYGA GEVVLWDRGR 

       130        140        150        160        170        180 
WSTDNGQDWT HRMPQLVTAL AALQLDDSWL DGEIVVNGDD GLPDFQALQN AFAQGASGRI 

       190        200        210        220        230        240 
VYYLFDAPWL SGDELAALPL VERKHRLAAA LAGGEGGASV YSEHFAGDVG AALEQACHLG 

       250        260        270        280        290        300 
LEGLIGKRGD ARYGSGRSCS WIKLKCRPRQ EFVIGGYTEP GGAREGFGAL LVGLYDDAGA 

       310        320        330        340        350        360 
LNYAGKVGTG FDRETLERLA RQLAALERKD SPFARKPRGA GQHWVRPALV AEVEYAGWTR 

       370        380        390        400        410        420 
DNLLRQAAFA GLREDKPANT VQDEIPLSPQ VAAEMEQPPS QAKSPRRQKK KPSTERGGPA 

       430        440        450        460        470        480 
KPRASSESGE VRVAGIVITH PERVVWPDAG LTKADLARYY EDIAPWLLPH VASRPLSLLR 

       490        500        510        520        530        540 
CPDGSEAECF FQRHMGQERP DGVESFIWEA SSKDRRSYLY VTSLEGVIGM VQRGVVEFHT 

       550        560        570        580        590        600 
WGSTMPRADR PDRITIDLDP GPELAWARVV EAAQLVRGLL GELGIASFVK TTGGKGLHVV 

       610        620        630        640        650        660 
VPLRRGPQWA DVKRFAKAVA THLARILPDR FTANMARNQR AGRIFVDYLR NDAGASAICA 

       670        680        690        700        710        720 
YAARARPGAP VSTPLAWDEL GPELKPGAFT VLTVADRLAR LREDPWRDYA KQRFVLTGKM 

       730        740 
WEALGETPPR KTPNQAEQRH SD

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References

[1]"The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1."
Rabus R., Kube M., Heider J., Beck A., Heitmann K., Widdel F., Reinhardt R.
Arch. Microbiol. 183:27-36(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: EbN1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CR555306 Genomic DNA. Translation: CAI09926.1.
RefSeqYP_160827.1. NC_006513.1.

3D structure databases

ProteinModelPortalQ5NYD8.
ModBaseSearch...

Protein-protein interaction databases

STRING76114.ebA6655.
Q5NYD8.

Proteomic databases

PRIDEQ5NYD8.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAI09926; CAI09926; ebA6655.
GeneID3179186.
KEGGeba:ebA6655.
PATRIC20973813. VBIAroAro98752_3824.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMADWTIRSI.

Enzyme and pathway databases

BioCycAARO76114:GJTA-3853-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ5NYD8_AROAE
AccessionPrimary (citable) accession number: Q5NYD8
Entry history
Integrated into UniProtKB/TrEMBL: January 4, 2005
Last sequence update: January 4, 2005
Last modified: May 1, 2013
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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