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Q5NYD8

- Q5NYD8_AROAE

UniProt

Q5NYD8 - Q5NYD8_AROAE

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Protein
Submitted name: ATP-dependent DNA ligase
Gene
ebA6655
Organism
Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1))
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciAARO76114:GJTA-3853-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
ORF Names:ebA6655Imported
OrganismiAromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1))Imported
Taxonomic identifieri76114 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaRhodocyclalesRhodocyclaceaeAromatoleum
ProteomesiUP000006552: Chromosome

PTM / Processingi

Proteomic databases

PRIDEiQ5NYD8.

Interactioni

Protein-protein interaction databases

STRINGi76114.ebA6655.

Structurei

3D structure databases

ProteinModelPortaliQ5NYD8.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiVAFTEWT.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5NYD8-1 [UniParc]FASTAAdd to Basket

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MKRSESDKAR AGDPLARYRA MRDFGTTPEP GGDTVAVKAG DGPTFTVQRH    50
AARRLHYDFR LELDGVLKSW AAPKGPSLDP SERRLAVETE DHPLDYGDFE 100
GVIPARQYGA GEVVLWDRGR WSTDNGQDWT HRMPQLVTAL AALQLDDSWL 150
DGEIVVNGDD GLPDFQALQN AFAQGASGRI VYYLFDAPWL SGDELAALPL 200
VERKHRLAAA LAGGEGGASV YSEHFAGDVG AALEQACHLG LEGLIGKRGD 250
ARYGSGRSCS WIKLKCRPRQ EFVIGGYTEP GGAREGFGAL LVGLYDDAGA 300
LNYAGKVGTG FDRETLERLA RQLAALERKD SPFARKPRGA GQHWVRPALV 350
AEVEYAGWTR DNLLRQAAFA GLREDKPANT VQDEIPLSPQ VAAEMEQPPS 400
QAKSPRRQKK KPSTERGGPA KPRASSESGE VRVAGIVITH PERVVWPDAG 450
LTKADLARYY EDIAPWLLPH VASRPLSLLR CPDGSEAECF FQRHMGQERP 500
DGVESFIWEA SSKDRRSYLY VTSLEGVIGM VQRGVVEFHT WGSTMPRADR 550
PDRITIDLDP GPELAWARVV EAAQLVRGLL GELGIASFVK TTGGKGLHVV 600
VPLRRGPQWA DVKRFAKAVA THLARILPDR FTANMARNQR AGRIFVDYLR 650
NDAGASAICA YAARARPGAP VSTPLAWDEL GPELKPGAFT VLTVADRLAR 700
LREDPWRDYA KQRFVLTGKM WEALGETPPR KTPNQAEQRH SD 742
Length:742
Mass (Da):81,444
Last modified:January 4, 2005 - v1
Checksum:i2E1A1DB34F7940B3
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CR555306 Genomic DNA. Translation: CAI09926.1.
RefSeqiYP_160827.1. NC_006513.1.

Genome annotation databases

EnsemblBacteriaiCAI09926; CAI09926; ebA6655.
GeneIDi3179186.
KEGGieba:ebA6655.
PATRICi20973813. VBIAroAro98752_3824.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CR555306 Genomic DNA. Translation: CAI09926.1 .
RefSeqi YP_160827.1. NC_006513.1.

3D structure databases

ProteinModelPortali Q5NYD8.
ModBasei Search...

Protein-protein interaction databases

STRINGi 76114.ebA6655.

Proteomic databases

PRIDEi Q5NYD8.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAI09926 ; CAI09926 ; ebA6655 .
GeneIDi 3179186.
KEGGi eba:ebA6655.
PATRICi 20973813. VBIAroAro98752_3824.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi VAFTEWT.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci AARO76114:GJTA-3853-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1."
    Rabus R., Kube M., Heider J., Beck A., Heitmann K., Widdel F., Reinhardt R.
    Arch. Microbiol. 183:27-36(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: EbN1Imported.

Entry informationi

Entry nameiQ5NYD8_AROAE
AccessioniPrimary (citable) accession number: Q5NYD8
Entry historyi
Integrated into UniProtKB/TrEMBL: January 4, 2005
Last sequence update: January 4, 2005
Last modified: May 14, 2014
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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