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Q5NYD8

- Q5NYD8_AROAE

UniProt

Q5NYD8 - Q5NYD8_AROAE

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ebA6655

Organism
Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1))
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 66 (01 Oct 2014)
      Sequence version 1 (04 Jan 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciAARO76114:GJTA-3853-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    ORF Names:ebA6655Imported
    OrganismiAromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1))Imported
    Taxonomic identifieri76114 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaRhodocyclalesRhodocyclaceaeAromatoleum
    ProteomesiUP000006552: Chromosome

    PTM / Processingi

    Proteomic databases

    PRIDEiQ5NYD8.

    Interactioni

    Protein-protein interaction databases

    STRINGi76114.ebA6655.

    Structurei

    3D structure databases

    ProteinModelPortaliQ5NYD8.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiVAFTEWT.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q5NYD8-1 [UniParc]FASTAAdd to Basket

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    MKRSESDKAR AGDPLARYRA MRDFGTTPEP GGDTVAVKAG DGPTFTVQRH    50
    AARRLHYDFR LELDGVLKSW AAPKGPSLDP SERRLAVETE DHPLDYGDFE 100
    GVIPARQYGA GEVVLWDRGR WSTDNGQDWT HRMPQLVTAL AALQLDDSWL 150
    DGEIVVNGDD GLPDFQALQN AFAQGASGRI VYYLFDAPWL SGDELAALPL 200
    VERKHRLAAA LAGGEGGASV YSEHFAGDVG AALEQACHLG LEGLIGKRGD 250
    ARYGSGRSCS WIKLKCRPRQ EFVIGGYTEP GGAREGFGAL LVGLYDDAGA 300
    LNYAGKVGTG FDRETLERLA RQLAALERKD SPFARKPRGA GQHWVRPALV 350
    AEVEYAGWTR DNLLRQAAFA GLREDKPANT VQDEIPLSPQ VAAEMEQPPS 400
    QAKSPRRQKK KPSTERGGPA KPRASSESGE VRVAGIVITH PERVVWPDAG 450
    LTKADLARYY EDIAPWLLPH VASRPLSLLR CPDGSEAECF FQRHMGQERP 500
    DGVESFIWEA SSKDRRSYLY VTSLEGVIGM VQRGVVEFHT WGSTMPRADR 550
    PDRITIDLDP GPELAWARVV EAAQLVRGLL GELGIASFVK TTGGKGLHVV 600
    VPLRRGPQWA DVKRFAKAVA THLARILPDR FTANMARNQR AGRIFVDYLR 650
    NDAGASAICA YAARARPGAP VSTPLAWDEL GPELKPGAFT VLTVADRLAR 700
    LREDPWRDYA KQRFVLTGKM WEALGETPPR KTPNQAEQRH SD 742
    Length:742
    Mass (Da):81,444
    Last modified:January 4, 2005 - v1
    Checksum:i2E1A1DB34F7940B3
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CR555306 Genomic DNA. Translation: CAI09926.1.
    RefSeqiYP_160827.1. NC_006513.1.

    Genome annotation databases

    EnsemblBacteriaiCAI09926; CAI09926; ebA6655.
    GeneIDi3179186.
    KEGGieba:ebA6655.
    PATRICi20973813. VBIAroAro98752_3824.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CR555306 Genomic DNA. Translation: CAI09926.1 .
    RefSeqi YP_160827.1. NC_006513.1.

    3D structure databases

    ProteinModelPortali Q5NYD8.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 76114.ebA6655.

    Proteomic databases

    PRIDEi Q5NYD8.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAI09926 ; CAI09926 ; ebA6655 .
    GeneIDi 3179186.
    KEGGi eba:ebA6655.
    PATRICi 20973813. VBIAroAro98752_3824.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi VAFTEWT.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci AARO76114:GJTA-3853-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1."
      Rabus R., Kube M., Heider J., Beck A., Heitmann K., Widdel F., Reinhardt R.
      Arch. Microbiol. 183:27-36(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: EbN1Imported.

    Entry informationi

    Entry nameiQ5NYD8_AROAE
    AccessioniPrimary (citable) accession number: Q5NYD8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: January 4, 2005
    Last sequence update: January 4, 2005
    Last modified: October 1, 2014
    This is version 66 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3