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Q5NBP9 (GLU2B_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 76. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Glucosidase 2 subunit beta
Alternative name(s):
Glucosidase II subunit beta
Gene names
Ordered Locus Names:Os01g0276800
ORF Names:OsJ_01291, P0038F12.26
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length614 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

Regulatory subunit of glucosidase II. May be required for defense response elicited by pathogen-associated molecular patterns (PAMPs) By similarity.

Pathway

Glycan metabolism; N-glycan metabolism.

Subunit structure

Heterodimer of a catalytic alpha subunit and a beta subunit By similarity.

Subcellular location

Endoplasmic reticulum By similarity.

Ontologies

Keywords
   Biological processPlant defense
   Cellular componentEndoplasmic reticulum
   DomainSignal
   PTMGlycoprotein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processdefense response to bacterium

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

   Cellular_componentendoplasmic reticulum

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 1919 Potential
Chain20 – 614595Glucosidase 2 subunit beta
PRO_0000425977

Regions

Compositional bias162 – 375214Glu-rich (acidic)
Compositional bias376 – 41843Asp-rich

Amino acid modifications

Glycosylation1151N-linked (GlcNAc...) Potential

Experimental info

Sequence conflict1441V → F in EEE54323. Ref.4

Sequences

Sequence LengthMass (Da)Tools
Q5NBP9 [UniParc].

Last modified February 1, 2005. Version 1.
Checksum: 2105F4D8F290DCA5

FASTA61469,316
        10         20         30         40         50         60 
MGLHAILLLL LLRISASAAA SRPPLDTLGI PPQDEAYFRG GVIRCRDGSG RFARDKLNDD 

        70         80         90        100        110        120 
FCDCPDGTDE PGTSACPEGK FYCQNAGHSP ITIFSSRVND GICDCCDGSD EYDSNVTCKN 

       130        140        150        160        170        180 
TCWEAGKAAR DKLKKKVATY KSGVVIRNQE IQKAKVAFAK DEAELAKLKG EEKILQGLVD 

       190        200        210        220        230        240 
KLTEQKKLIE KAEEEERLRK EKEEKRMKEE AEKQAADEKK ASDASQEVDS QENHETVQED 

       250        260        270        280        290        300 
ESKVAEHHDG HATSHDNHTP ESESSVEQHD PESQDDISIK AAPADESPPE ETSAAPTKEQ 

       310        320        330        340        350        360 
ESTPADSEGL SREELGRLVA SRWTGEKVDE VSKDDKNEHE AEHDMPEHSE ETHEDESDVP 

       370        380        390        400        410        420 
ESAEDSYAGY HSEVEDDRHK YDDEDFSHES DDEYVDDHDE HVASYKSDDD QKGDDHSDFT 

       430        440        450        460        470        480 
ASGQASWLDK IQQTVQNVLR TFNFFKTPVD LSEASRVRKE YDDASSKLSK IQSRISTLTD 

       490        500        510        520        530        540 
KLKHDFGKEK EFYYFYDQCF ESKEGKYVYK VCPFKKASQV EGHSTTSLGR WDKFEESYRV 

       550        560        570        580        590        600 
MQFSNGDRCW NGPDRSLKVR LRCGLNNELN GVDEPSRCEY VAVLSTPALC DEQKLKELEQ 

       610 
KLKASSNQRD HDEL 

« Hide

References

« Hide 'large scale' references
[1]"The genome sequence and structure of rice chromosome 1."
Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M. expand/collapse author list , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.
Nature 420:312-316(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[2]"The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[3]"The rice annotation project database (RAP-DB): 2008 update."
The rice annotation project (RAP)
Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: cv. Nipponbare.
[4]"The genomes of Oryza sativa: a history of duplications."
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L. expand/collapse author list , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[5]"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
The rice full-length cDNA consortium
Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Nipponbare.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP000836 Genomic DNA. Translation: BAD81117.1.
AP008207 Genomic DNA. Translation: BAF04646.1.
CM000138 Genomic DNA. Translation: EEE54323.1.
AK102926 mRNA. Translation: BAG95785.1.
RefSeqNP_001042732.1. NM_001049267.1.
UniGeneOs.6899.

3D structure databases

ProteinModelPortalQ5NBP9.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEQ5NBP9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsOS01T0276800-01; OS01T0276800-01; OS01G0276800.
GeneID4324264.
KEGGosa:4324264.

Phylogenomic databases

KOK08288.
OMAGQHCWNG.

Enzyme and pathway databases

UniPathwayUPA00957.

Family and domain databases

Gene3D2.70.130.10. 1 hit.
InterProIPR002172. LDrepeatLR_classA_rpt.
IPR009011. Man6P_isomerase_rcpt-bd_dom.
IPR028146. PRKCSH_N.
[Graphical view]
PfamPF12999. PRKCSH-like. 1 hit.
[Graphical view]
SMARTSM00192. LDLa. 1 hit.
[Graphical view]
SUPFAMSSF50911. SSF50911. 1 hit.
PROSITEPS00014. ER_TARGET. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameGLU2B_ORYSJ
AccessionPrimary (citable) accession number: Q5NBP9
Secondary accession number(s): B9EV73
Entry history
Integrated into UniProtKB/Swiss-Prot: April 16, 2014
Last sequence update: February 1, 2005
Last modified: June 11, 2014
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations

PATHWAY comments

Index of metabolic and biosynthesis pathways