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Q5NBP9

- GLU2B_ORYSJ

UniProt

Q5NBP9 - GLU2B_ORYSJ

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Protein

Glucosidase 2 subunit beta

Gene

Os01g0276800

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli

Functioni

Regulatory subunit of glucosidase II. May be required for defense response elicited by pathogen-associated molecular patterns (PAMPs) (By similarity).By similarity

Pathwayi

GO - Biological processi

  1. cellulose biosynthetic process Source: EnsemblPlants/Gramene
  2. defense response to bacterium Source: EnsemblPlants/Gramene
  3. Golgi vesicle transport Source: EnsemblPlants/Gramene
  4. methionine biosynthetic process Source: EnsemblPlants/Gramene
  5. N-glycan processing Source: EnsemblPlants/Gramene
  6. RNA splicing, via endonucleolytic cleavage and ligation Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Biological processi

Plant defense

Enzyme and pathway databases

ReactomeiREACT_204805. Calnexin/calreticulin cycle.
REACT_205049. Advanced glycosylation endproduct receptor signaling.
UniPathwayiUPA00957.

Names & Taxonomyi

Protein namesi
Recommended name:
Glucosidase 2 subunit beta
Alternative name(s):
Glucosidase II subunit beta
Gene namesi
Ordered Locus Names:Os01g0276800
ORF Names:OsJ_01291, P0038F12.26
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 1

Subcellular locationi

Endoplasmic reticulum PROSITE-ProRule annotation

GO - Cellular componenti

  1. endoplasmic reticulum Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Endoplasmic reticulum

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919Sequence AnalysisAdd
BLAST
Chaini20 – 614595Glucosidase 2 subunit betaPRO_0000425977Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi115 – 1151N-linked (GlcNAc...)Sequence Analysis

Keywords - PTMi

Glycoprotein

Proteomic databases

PRIDEiQ5NBP9.

Expressioni

Gene expression databases

ExpressionAtlasiQ5NBP9. baseline.

Interactioni

Subunit structurei

Heterodimer of a catalytic alpha subunit and a beta subunit.By similarity

Structurei

3D structure databases

ProteinModelPortaliQ5NBP9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi162 – 375214Glu-rich (acidic)Add
BLAST
Compositional biasi376 – 41843Asp-richAdd
BLAST

Keywords - Domaini

Signal

Phylogenomic databases

InParanoidiQ5NBP9.
KOiK08288.
OMAiGQHCWNG.

Family and domain databases

Gene3Di2.70.130.10. 1 hit.
InterProiIPR002172. LDrepeatLR_classA_rpt.
IPR009011. Man6P_isomerase_rcpt-bd_dom.
IPR028146. PRKCSH_N.
[Graphical view]
PfamiPF12999. PRKCSH-like. 1 hit.
[Graphical view]
SMARTiSM00192. LDLa. 1 hit.
[Graphical view]
SUPFAMiSSF50911. SSF50911. 1 hit.
PROSITEiPS00014. ER_TARGET. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q5NBP9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MGLHAILLLL LLRISASAAA SRPPLDTLGI PPQDEAYFRG GVIRCRDGSG
60 70 80 90 100
RFARDKLNDD FCDCPDGTDE PGTSACPEGK FYCQNAGHSP ITIFSSRVND
110 120 130 140 150
GICDCCDGSD EYDSNVTCKN TCWEAGKAAR DKLKKKVATY KSGVVIRNQE
160 170 180 190 200
IQKAKVAFAK DEAELAKLKG EEKILQGLVD KLTEQKKLIE KAEEEERLRK
210 220 230 240 250
EKEEKRMKEE AEKQAADEKK ASDASQEVDS QENHETVQED ESKVAEHHDG
260 270 280 290 300
HATSHDNHTP ESESSVEQHD PESQDDISIK AAPADESPPE ETSAAPTKEQ
310 320 330 340 350
ESTPADSEGL SREELGRLVA SRWTGEKVDE VSKDDKNEHE AEHDMPEHSE
360 370 380 390 400
ETHEDESDVP ESAEDSYAGY HSEVEDDRHK YDDEDFSHES DDEYVDDHDE
410 420 430 440 450
HVASYKSDDD QKGDDHSDFT ASGQASWLDK IQQTVQNVLR TFNFFKTPVD
460 470 480 490 500
LSEASRVRKE YDDASSKLSK IQSRISTLTD KLKHDFGKEK EFYYFYDQCF
510 520 530 540 550
ESKEGKYVYK VCPFKKASQV EGHSTTSLGR WDKFEESYRV MQFSNGDRCW
560 570 580 590 600
NGPDRSLKVR LRCGLNNELN GVDEPSRCEY VAVLSTPALC DEQKLKELEQ
610
KLKASSNQRD HDEL
Length:614
Mass (Da):69,316
Last modified:February 1, 2005 - v1
Checksum:i2105F4D8F290DCA5
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti144 – 1441V → F in EEE54323. (PubMed:15685292)Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP000836 Genomic DNA. Translation: BAD81117.1.
AP008207 Genomic DNA. Translation: BAF04646.1.
CM000138 Genomic DNA. Translation: EEE54323.1.
AK102926 mRNA. Translation: BAG95785.1.
RefSeqiNP_001042732.1. NM_001049267.1.
UniGeneiOs.6899.

Genome annotation databases

EnsemblPlantsiOS01T0276800-01; OS01T0276800-01; OS01G0276800.
GeneIDi4324264.
KEGGiosa:4324264.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP000836 Genomic DNA. Translation: BAD81117.1 .
AP008207 Genomic DNA. Translation: BAF04646.1 .
CM000138 Genomic DNA. Translation: EEE54323.1 .
AK102926 mRNA. Translation: BAG95785.1 .
RefSeqi NP_001042732.1. NM_001049267.1.
UniGenei Os.6899.

3D structure databases

ProteinModelPortali Q5NBP9.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi Q5NBP9.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS01T0276800-01 ; OS01T0276800-01 ; OS01G0276800 .
GeneIDi 4324264.
KEGGi osa:4324264.

Phylogenomic databases

InParanoidi Q5NBP9.
KOi K08288.
OMAi GQHCWNG.

Enzyme and pathway databases

UniPathwayi UPA00957 .
Reactomei REACT_204805. Calnexin/calreticulin cycle.
REACT_205049. Advanced glycosylation endproduct receptor signaling.

Gene expression databases

ExpressionAtlasi Q5NBP9. baseline.

Family and domain databases

Gene3Di 2.70.130.10. 1 hit.
InterProi IPR002172. LDrepeatLR_classA_rpt.
IPR009011. Man6P_isomerase_rcpt-bd_dom.
IPR028146. PRKCSH_N.
[Graphical view ]
Pfami PF12999. PRKCSH-like. 1 hit.
[Graphical view ]
SMARTi SM00192. LDLa. 1 hit.
[Graphical view ]
SUPFAMi SSF50911. SSF50911. 1 hit.
PROSITEi PS00014. ER_TARGET. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The genome sequence and structure of rice chromosome 1."
    Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.
    , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.
    Nature 420:312-316(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  5. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiGLU2B_ORYSJ
AccessioniPrimary (citable) accession number: Q5NBP9
Secondary accession number(s): B9EV73
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 16, 2014
Last sequence update: February 1, 2005
Last modified: November 26, 2014
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations

External Data

Dasty 3