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Q5NBP9

- GLU2B_ORYSJ

UniProt

Q5NBP9 - GLU2B_ORYSJ

Protein

Glucosidase 2 subunit beta

Gene

Os01g0276800

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 78 (01 Oct 2014)
      Sequence version 1 (01 Feb 2005)
      Previous versions | rss
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    Functioni

    Regulatory subunit of glucosidase II. May be required for defense response elicited by pathogen-associated molecular patterns (PAMPs) By similarity.By similarity

    Pathwayi

    GO - Biological processi

    1. defense response to bacterium Source: EnsemblPlants/Gramene

    Keywords - Biological processi

    Plant defense

    Enzyme and pathway databases

    ReactomeiREACT_205049. Advanced glycosylation endproduct receptor signaling.
    UniPathwayiUPA00957.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Glucosidase 2 subunit beta
    Alternative name(s):
    Glucosidase II subunit beta
    Gene namesi
    Ordered Locus Names:Os01g0276800
    ORF Names:OsJ_01291, P0038F12.26
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 1

    Subcellular locationi

    Endoplasmic reticulum PROSITE-ProRule annotation

    GO - Cellular componenti

    1. endoplasmic reticulum Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Endoplasmic reticulum

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 1919Sequence AnalysisAdd
    BLAST
    Chaini20 – 614595Glucosidase 2 subunit betaPRO_0000425977Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Glycosylationi115 – 1151N-linked (GlcNAc...)Sequence Analysis

    Keywords - PTMi

    Glycoprotein

    Proteomic databases

    PRIDEiQ5NBP9.

    Interactioni

    Subunit structurei

    Heterodimer of a catalytic alpha subunit and a beta subunit.By similarity

    Structurei

    3D structure databases

    ProteinModelPortaliQ5NBP9.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi162 – 375214Glu-rich (acidic)Add
    BLAST
    Compositional biasi376 – 41843Asp-richAdd
    BLAST

    Keywords - Domaini

    Signal

    Phylogenomic databases

    KOiK08288.
    OMAiGQHCWNG.

    Family and domain databases

    Gene3Di2.70.130.10. 1 hit.
    InterProiIPR002172. LDrepeatLR_classA_rpt.
    IPR009011. Man6P_isomerase_rcpt-bd_dom.
    IPR028146. PRKCSH_N.
    [Graphical view]
    PfamiPF12999. PRKCSH-like. 1 hit.
    [Graphical view]
    SMARTiSM00192. LDLa. 1 hit.
    [Graphical view]
    SUPFAMiSSF50911. SSF50911. 1 hit.
    PROSITEiPS00014. ER_TARGET. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q5NBP9-1 [UniParc]FASTAAdd to Basket

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    MGLHAILLLL LLRISASAAA SRPPLDTLGI PPQDEAYFRG GVIRCRDGSG    50
    RFARDKLNDD FCDCPDGTDE PGTSACPEGK FYCQNAGHSP ITIFSSRVND 100
    GICDCCDGSD EYDSNVTCKN TCWEAGKAAR DKLKKKVATY KSGVVIRNQE 150
    IQKAKVAFAK DEAELAKLKG EEKILQGLVD KLTEQKKLIE KAEEEERLRK 200
    EKEEKRMKEE AEKQAADEKK ASDASQEVDS QENHETVQED ESKVAEHHDG 250
    HATSHDNHTP ESESSVEQHD PESQDDISIK AAPADESPPE ETSAAPTKEQ 300
    ESTPADSEGL SREELGRLVA SRWTGEKVDE VSKDDKNEHE AEHDMPEHSE 350
    ETHEDESDVP ESAEDSYAGY HSEVEDDRHK YDDEDFSHES DDEYVDDHDE 400
    HVASYKSDDD QKGDDHSDFT ASGQASWLDK IQQTVQNVLR TFNFFKTPVD 450
    LSEASRVRKE YDDASSKLSK IQSRISTLTD KLKHDFGKEK EFYYFYDQCF 500
    ESKEGKYVYK VCPFKKASQV EGHSTTSLGR WDKFEESYRV MQFSNGDRCW 550
    NGPDRSLKVR LRCGLNNELN GVDEPSRCEY VAVLSTPALC DEQKLKELEQ 600
    KLKASSNQRD HDEL 614
    Length:614
    Mass (Da):69,316
    Last modified:February 1, 2005 - v1
    Checksum:i2105F4D8F290DCA5
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti144 – 1441V → F in EEE54323. (PubMed:15685292)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP000836 Genomic DNA. Translation: BAD81117.1.
    AP008207 Genomic DNA. Translation: BAF04646.1.
    CM000138 Genomic DNA. Translation: EEE54323.1.
    AK102926 mRNA. Translation: BAG95785.1.
    RefSeqiNP_001042732.1. NM_001049267.1.
    UniGeneiOs.6899.

    Genome annotation databases

    EnsemblPlantsiOS01T0276800-01; OS01T0276800-01; OS01G0276800.
    GeneIDi4324264.
    KEGGiosa:4324264.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP000836 Genomic DNA. Translation: BAD81117.1 .
    AP008207 Genomic DNA. Translation: BAF04646.1 .
    CM000138 Genomic DNA. Translation: EEE54323.1 .
    AK102926 mRNA. Translation: BAG95785.1 .
    RefSeqi NP_001042732.1. NM_001049267.1.
    UniGenei Os.6899.

    3D structure databases

    ProteinModelPortali Q5NBP9.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi Q5NBP9.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS01T0276800-01 ; OS01T0276800-01 ; OS01G0276800 .
    GeneIDi 4324264.
    KEGGi osa:4324264.

    Phylogenomic databases

    KOi K08288.
    OMAi GQHCWNG.

    Enzyme and pathway databases

    UniPathwayi UPA00957 .
    Reactomei REACT_205049. Advanced glycosylation endproduct receptor signaling.

    Family and domain databases

    Gene3Di 2.70.130.10. 1 hit.
    InterProi IPR002172. LDrepeatLR_classA_rpt.
    IPR009011. Man6P_isomerase_rcpt-bd_dom.
    IPR028146. PRKCSH_N.
    [Graphical view ]
    Pfami PF12999. PRKCSH-like. 1 hit.
    [Graphical view ]
    SMARTi SM00192. LDLa. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50911. SSF50911. 1 hit.
    PROSITEi PS00014. ER_TARGET. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence and structure of rice chromosome 1."
      Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.
      , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.
      Nature 420:312-316(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    3. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    4. "The genomes of Oryza sativa: a history of duplications."
      Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
      , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
      PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    5. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
      The rice full-length cDNA consortium
      Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Nipponbare.

    Entry informationi

    Entry nameiGLU2B_ORYSJ
    AccessioniPrimary (citable) accession number: Q5NBP9
    Secondary accession number(s): B9EV73
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 16, 2014
    Last sequence update: February 1, 2005
    Last modified: October 1, 2014
    This is version 78 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations

    External Data

    Dasty 3