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Q5NAW2 (C3H6_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 53. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Zinc finger CCCH domain-containing protein 6

Short name=OsC3H6
Alternative name(s):
Zinc finger CCCH domain-containing protein ZFN-like 1
Gene names
Ordered Locus Names:Os01g0258700, LOC_Os01g15460
ORF Names:P0462H08.27-1, P0462H08.27-2
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length476 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Subcellular location

Nucleus By similarity.

Sequence similarities

Contains 5 C3H1-type zinc fingers.

Ontologies

Keywords
   Cellular componentNucleus
   Coding sequence diversityAlternative splicing
   DomainRepeat
Zinc-finger
   LigandDNA-binding
Metal-binding
Zinc
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentnucleus

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionDNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

metal ion binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Alternative products

This entry describes 3 isoforms produced by alternative splicing. [Align] [Select]
Isoform 1 (identifier: Q5NAW2-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 2 (identifier: Q5NAW2-2)

The sequence of this isoform differs from the canonical sequence as follows:
     1-29: Missing.
Note: May be due to intron retention. No experimental confirmation available.
Isoform 3 (identifier: Q5NAW2-3)

The sequence of this isoform differs from the canonical sequence as follows:
     1-269: Missing.
Note: May be due to intron retention.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 476476Zinc finger CCCH domain-containing protein 6
PRO_0000213922

Regions

Zinc finger59 – 8729C3H1-type 1
Zinc finger108 – 13629C3H1-type 2
Zinc finger153 – 18129C3H1-type 3
Zinc finger307 – 33529C3H1-type 4
Zinc finger353 – 38129C3H1-type 5
Compositional bias6 – 116Poly-Ala
Compositional bias34 – 5017Poly-Gly

Natural variations

Alternative sequence1 – 269269Missing in isoform 3.
VSP_013560
Alternative sequence1 – 2929Missing in isoform 2.
VSP_013559

Experimental info

Sequence conflict1581E → K in AK111903. Ref.5
Sequence conflict3861S → G in AK111727. Ref.5

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 [UniParc].

Last modified April 26, 2005. Version 2.
Checksum: 46F41CB2DC3D6A52

FASTA47649,835
        10         20         30         40         50         60 
MEQPHAAAAA AGGGEGEGGA SPDTGLEGPM WRMGLGGGGG GGGGGGGGDG DAAGRLPERP 

        70         80         90        100        110        120 
GEEDCVYYLR TGACGFGDRC RYNHPRDRGG TEFGGGARNA AALDYPERAG QPICEYYMKT 

       130        140        150        160        170        180 
GTCKFGTNCK YHHPKQDGAV LPVMLNNSGF PIRLGEKECS YYMKTGQCKF GTTCKFHHPE 

       190        200        210        220        230        240 
FGGVPMTPGI YPPLQSPSIA SPHPYASLAN WQMGRPPVVP GSYIPGSYTP MMLSSGMIPL 

       250        260        270        280        290        300 
QGWSPYPASV NPVVSGGAQQ NVQAGPVYGM GHHGSSSTIA YGGPYVPYAS STGQSSNNQQ 

       310        320        330        340        350        360 
EHGFPERPGQ PDCQYYMRTG DCKFGATCKY HHPRELSAPK SGYMVNSLCL PLRPGAQPCA 

       370        380        390        400        410        420 
YYAQNGYCRY GVACKYDHPM GTLGYSPSAL PLSDMPIAPY PIGFSIATLA PSSPSPDLRP 

       430        440        450        460        470 
EYISTKDQSV NQVTSPVAAS EPVGSILPKG VFPADTMMRA QTNTTSGGSS SPGGGR 

« Hide

Isoform 2 [UniParc].

Checksum: C31C997ED8199815
Show »

FASTA44747,260
Isoform 3 [UniParc].

Checksum: 1D9AA0F7A12AB1BC
Show »

FASTA20721,911

References

« Hide 'large scale' references
[1]"Molecular cloning and expression of a Magnaporthe grisea induced cDNA encoding a zinc-finger transcription factor."
Meng X.-B., Lin R.-M., Wang M., Zhao W.-S., Zhang S.-H., Peng Y.-L.
Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3).
Strain: cv. Aichiasahi.
[2]"The genome sequence and structure of rice chromosome 1."
Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M. expand/collapse author list , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.
Nature 420:312-316(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[3]"The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[4]"The rice annotation project database (RAP-DB): 2008 update."
The rice annotation project (RAP)
Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: cv. Nipponbare.
[5]"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
The rice full-length cDNA consortium
Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
Strain: cv. Nipponbare.
[6]"Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice."
Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.
BMC Genomics 9:44-44(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NOMENCLATURE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY573063 mRNA. Translation: AAT35591.1.
AY620413 mRNA. Translation: AAT28673.1.
AP002525 Genomic DNA. Translation: BAD81401.1.
AP002525 Genomic DNA. Translation: BAD81402.1.
AP008207 Genomic DNA. Translation: BAF04551.1.
AK111633 mRNA. No translation available.
AK111727 mRNA. No translation available.
AK111903 mRNA. No translation available.
RefSeqNP_001042637.1. NM_001049172.1. [Q5NAW2-1]
UniGeneOs.9931.

3D structure databases

ProteinModelPortalQ5NAW2.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PaxDbQ5NAW2.
PRIDEQ5NAW2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsOS01T0258700-01; OS01T0258700-01; OS01G0258700. [Q5NAW2-1]
GeneID4326236.
KEGGosa:4326236.

Organism-specific databases

GrameneQ5NAW2.

Phylogenomic databases

eggNOGNOG312935.
HOGENOMHOG000237733.
OMAWSPYPAS.

Family and domain databases

Gene3D4.10.1000.10. 4 hits.
InterProIPR000571. Znf_CCCH.
[Graphical view]
PfamPF00642. zf-CCCH. 5 hits.
[Graphical view]
SMARTSM00356. ZnF_C3H1. 5 hits.
[Graphical view]
PROSITEPS50103. ZF_C3H1. 5 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC3H6_ORYSJ
AccessionPrimary (citable) accession number: Q5NAW2
Secondary accession number(s): Q0JNX7, Q5NAW3, Q6IVC4
Entry history
Integrated into UniProtKB/Swiss-Prot: April 26, 2005
Last sequence update: April 26, 2005
Last modified: May 14, 2014
This is version 53 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations