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Q5N8X6

- BGAL3_ORYSJ

UniProt

Q5N8X6 - BGAL3_ORYSJ

Protein

Beta-galactosidase 3

Gene

Os01g0875500

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 68 (01 Oct 2014)
      Sequence version 1 (01 Feb 2005)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei194 – 1941Proton donorSequence Analysis
    Active sitei263 – 2631NucleophileSequence Analysis

    GO - Molecular functioni

    1. beta-galactosidase activity Source: UniProtKB-EC
    2. carbohydrate binding Source: InterPro

    GO - Biological processi

    1. carbohydrate metabolic process Source: InterPro
    2. response to karrikin Source: EnsemblPlants/Gramene

    Keywords - Molecular functioni

    Glycosidase, Hydrolase

    Protein family/group databases

    CAZyiGH35. Glycoside Hydrolase Family 35.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Beta-galactosidase 3 (EC:3.2.1.23)
    Short name:
    Lactase 3
    Gene namesi
    Ordered Locus Names:Os01g0875500, LOC_Os01g65460
    ORF Names:P0648C09.21, P0698A10.24
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 1

    Organism-specific databases

    GrameneiQ5N8X6.

    Subcellular locationi

    GO - Cellular componenti

    1. apoplast Source: UniProtKB-SubCell
    2. plant-type cell wall Source: EnsemblPlants/Gramene

    Keywords - Cellular componenti

    Apoplast, Secreted

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2929Sequence AnalysisAdd
    BLAST
    Chaini30 – 851822Beta-galactosidase 3PRO_0000294154Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Glycosylationi35 – 351N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi361 – 3611N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi475 – 4751N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi528 – 5281N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi533 – 5331N-linked (GlcNAc...)Sequence Analysis

    Keywords - PTMi

    Glycoprotein

    Proteomic databases

    PRIDEiQ5N8X6.

    Structurei

    3D structure databases

    ProteinModelPortaliQ5N8X6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini765 – 85187SUEL-type lectinPROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 35 family.Curated
    Contains 1 SUEL-type lectin domain.PROSITE-ProRule annotation

    Keywords - Domaini

    Signal

    Phylogenomic databases

    eggNOGiCOG1874.

    Family and domain databases

    Gene3Di2.60.120.260. 2 hits.
    3.20.20.80. 1 hit.
    InterProiIPR025300. BetaGal_jelly_roll_dom.
    IPR008979. Galactose-bd-like.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR001944. Glycoside_Hdrlase_35.
    IPR017853. Glycoside_hydrolase_SF.
    IPR000922. Lectin_gal-bd_dom.
    [Graphical view]
    PANTHERiPTHR23421. PTHR23421. 1 hit.
    PfamiPF13364. BetaGal_dom4_5. 1 hit.
    PF02140. Gal_Lectin. 1 hit.
    PF01301. Glyco_hydro_35. 1 hit.
    [Graphical view]
    PRINTSiPR00742. GLHYDRLASE35.
    SUPFAMiSSF49785. SSF49785. 3 hits.
    SSF51445. SSF51445. 1 hit.
    PROSITEiPS50228. SUEL_LECTIN. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q5N8X6-1 [UniParc]FASTAAdd to Basket

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    MAGASSYFSL RRLLLLLLPL VPLLGATTAA AAGANSSVTY DHRSLIISGR    50
    RRLLISTSIH YPRSVPEMWP KLVAEAKDGG ADCVETYVFW NGHEPAQGQY 100
    YFEERFDLVR FAKIVKDAGL YMILRIGPFV AAEWTFGGVP VWLHYAPGTV 150
    FRTNNEPFKS HMKRFTTYIV DMMKKEQFFA SQGGHIILAQ VENEYGDMEQ 200
    AYGAGAKPYA MWAASMALAQ NTGVPWIMCQ QYDAPDPVIN TCNSFYCDQF 250
    KPNSPTKPKF WTENWPGWFQ TFGESNPHRP PEDVAFSVAR FFGKGGSLQN 300
    YYVYHGGTNF GRTTGGPFIT TSYDYDAPID EYGLRRLPKW AHLRDLHKSI 350
    KLGEHTLLYG NSSFVSLGPQ QEADVYTDQS GGCVAFLSNV DSEKDKVVTF 400
    QSRSYDLPAW SVSILPDCKN VAFNTAKVRS QTLMMDMVPA NLESSKVDGW 450
    SIFREKYGIW GNIDLVRNGF VDHINTTKDS TDYLWYTTSF DVDGSHLAGG 500
    NHVLHIESKG HAVQAFLNNE LIGSAYGNGS KSNFSVEMPV NLRAGKNKLS 550
    LLSMTVGLQN GGPMYEWAGA GITSVKISGM ENRIIDLSSN KWEYKIGLEG 600
    EYYSLFKADK GKDIRWMPQS EPPKNQPMTW YKVNVDVPQG DDPVGLDMQS 650
    MGKGLAWLNG NAIGRYWPRI SPVSDRCTSS CDYRGTFSPN KCRRGCGQPT 700
    QRWYHVPRSW FHPSGNTLVI FEEKGGDPTK ITFSRRTVAS VCSFVSEHYP 750
    SIDLESWDRN TQNDGRDAAK VQLSCPKGKS ISSVKFVSFG NPSGTCRSYQ 800
    QGSCHHPNSI SVVEKACLNM NGCTVSLSDE GFGEDLCPGV TKTLAIEADC 850
    S 851
    Length:851
    Mass (Da):94,710
    Last modified:February 1, 2005 - v1
    Checksum:iD2E70688E717B2FD
    GO

    Sequence cautioni

    The sequence BAB86232.1 differs from that shown. Reason: Erroneous gene model prediction.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP003297 Genomic DNA. Translation: BAD82087.1.
    AP003922 Genomic DNA. Translation: BAB86232.1. Sequence problems.
    AP008207 Genomic DNA. Translation: BAF06878.1.
    RefSeqiNP_001044964.1. NM_001051499.1.
    UniGeneiOs.9892.

    Genome annotation databases

    GeneIDi4324777.
    KEGGiosa:4324777.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP003297 Genomic DNA. Translation: BAD82087.1 .
    AP003922 Genomic DNA. Translation: BAB86232.1 . Sequence problems.
    AP008207 Genomic DNA. Translation: BAF06878.1 .
    RefSeqi NP_001044964.1. NM_001051499.1.
    UniGenei Os.9892.

    3D structure databases

    ProteinModelPortali Q5N8X6.
    ModBasei Search...
    MobiDBi Search...

    Protein family/group databases

    CAZyi GH35. Glycoside Hydrolase Family 35.

    Proteomic databases

    PRIDEi Q5N8X6.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 4324777.
    KEGGi osa:4324777.

    Organism-specific databases

    Gramenei Q5N8X6.

    Phylogenomic databases

    eggNOGi COG1874.

    Family and domain databases

    Gene3Di 2.60.120.260. 2 hits.
    3.20.20.80. 1 hit.
    InterProi IPR025300. BetaGal_jelly_roll_dom.
    IPR008979. Galactose-bd-like.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR001944. Glycoside_Hdrlase_35.
    IPR017853. Glycoside_hydrolase_SF.
    IPR000922. Lectin_gal-bd_dom.
    [Graphical view ]
    PANTHERi PTHR23421. PTHR23421. 1 hit.
    Pfami PF13364. BetaGal_dom4_5. 1 hit.
    PF02140. Gal_Lectin. 1 hit.
    PF01301. Glyco_hydro_35. 1 hit.
    [Graphical view ]
    PRINTSi PR00742. GLHYDRLASE35.
    SUPFAMi SSF49785. SSF49785. 3 hits.
    SSF51445. SSF51445. 1 hit.
    PROSITEi PS50228. SUEL_LECTIN. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence and structure of rice chromosome 1."
      Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.
      , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.
      Nature 420:312-316(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    3. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.

    Entry informationi

    Entry nameiBGAL3_ORYSJ
    AccessioniPrimary (citable) accession number: Q5N8X6
    Secondary accession number(s): Q8RYX9
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 10, 2007
    Last sequence update: February 1, 2005
    Last modified: October 1, 2014
    This is version 68 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3