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Q5N863 (BGL04_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified March 19, 2014. Version 62. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Beta-glucosidase 4

Short name=Os1bglu4
EC=3.2.1.21
Gene names
Name:BGLU4
Ordered Locus Names:Os01g0897600, LOC_Os01g67220
ORF Names:OsJ_04409, P0506A10.5, P0674H09.22
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length483 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Catalytic activity

Hydrolysis of terminal, non-reducing beta-D-glucosyl residues with release of beta-D-glucose.

Sequence similarities

Belongs to the glycosyl hydrolase 1 family.

Ontologies

Keywords
   Molecular functionGlycosidase
Hydrolase
   PTMGlycoprotein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processcellular response to ethylene stimulus

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

cellular response to iron ion

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

cellular response to nitric oxide

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

cellulose catabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular_componentcytosol

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

   Molecular_functionbeta-glucosidase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 483483Beta-glucosidase 4
PRO_0000390323

Regions

Region436 – 4372Substrate binding By similarity

Sites

Active site1771Proton donor By similarity
Active site3801Nucleophile By similarity
Binding site291Substrate By similarity
Binding site1311Substrate By similarity
Binding site1761Substrate By similarity
Binding site3101Substrate By similarity
Binding site4291Substrate By similarity

Amino acid modifications

Glycosylation3981N-linked (GlcNAc...) Potential

Experimental info

Sequence conflict3691K → E in AK243365. Ref.3

Sequences

Sequence LengthMass (Da)Tools
Q5N863 [UniParc].

Last modified February 1, 2005. Version 1.
Checksum: C5D3F087EEA8A777

FASTA48355,295
        10         20         30         40         50         60 
MGSTGRDAEV TRGDFPDGFV FGVATSAYQI EGARREGGKG DNIWDVFTEN KERILDGSSG 

        70         80         90        100        110        120 
EVAVDHYHRY KEDIELMASL GFRAYRFSIS WPRIFPDGLG KNVNEQGVAF YNDLINFMIE 

       130        140        150        160        170        180 
KGIEPYATLY HWDLPHNLQQ TVGGWLSDKI VEYFALYAEA CFANFGDRVK HWITINEPLQ 

       190        200        210        220        230        240 
TAVNGYGIGH FAPGGCEGET ARCYLAAHYQ ILAHAAAVDV YRRKFKAVQG GEVGLVVDCE 

       250        260        270        280        290        300 
WAEPFSEKTE DQVAAERRLD FQLGWYLDPI YFGDYPESMR QRLGDDLPTF SEKDKEFIRN 

       310        320        330        340        350        360 
KIDFVGINHY TSRFIAHHQD PEDIYFYRVQ QVERIEKWNT GEKIGERAAS EWLFIVPWGL 

       370        380        390        400        410        420 
RKLLNYAAKR YGNPVIYVTE NGMDEEDDQS ATLDQVLNDT TRVGYFKGYL ASVAQAIKDG 

       430        440        450        460        470        480 
ADVRGYFAWS FLDNFEWAMG YTKRFGIVYV DYKNGLSRHP KASARWFSRF LKGDDAENKA 


DMN 

« Hide

References

« Hide 'large scale' references
[1]"The genome sequence and structure of rice chromosome 1."
Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M. expand/collapse author list , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.
Nature 420:312-316(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[2]"The genomes of Oryza sativa: a history of duplications."
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L. expand/collapse author list , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[3]"Oryza sativa full length cDNA."
The rice full-length cDNA consortium
Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Nipponbare.
[4]"Analysis of rice glycosyl hydrolase family 1 and expression of Os4bglu12 beta-glucosidase."
Opassiri R., Pomthong B., Onkoksoong T., Akiyama T., Esen A., Ketudat Cairns J.R.
BMC Plant Biol. 6:33-33(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: GENE FAMILY, NOMENCLATURE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP003349 Genomic DNA. Translation: BAD82183.1.
AP003418 Genomic DNA. Translation: BAD82346.1.
CM000138 Genomic DNA. Translation: EAZ14486.1.
AK243365 mRNA. No translation available.

3D structure databases

ProteinModelPortalQ5N863.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEQ5N863.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsOS01T0897600-01; OS01T0897600-01; OS01G0897600.

Organism-specific databases

GrameneQ5N863.

Phylogenomic databases

eggNOGCOG2723.
HOGENOMHOG000088630.
OMAAMDWEIV.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR001360. Glyco_hydro_1.
IPR018120. Glyco_hydro_1_AS.
IPR017736. Glyco_hydro_1_beta-glucosidase.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10353. PTHR10353. 1 hit.
PfamPF00232. Glyco_hydro_1. 1 hit.
[Graphical view]
PRINTSPR00131. GLHYDRLASE1.
SUPFAMSSF51445. SSF51445. 1 hit.
TIGRFAMsTIGR03356. BGL. 1 hit.
PROSITEPS00653. GLYCOSYL_HYDROL_F1_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameBGL04_ORYSJ
AccessionPrimary (citable) accession number: Q5N863
Entry history
Integrated into UniProtKB/Swiss-Prot: December 15, 2009
Last sequence update: February 1, 2005
Last modified: March 19, 2014
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations

Glycosyl hydrolases

Classification of glycosyl hydrolase families and list of entries