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Protein
Submitted name:

Uncharacterized protein

Gene

syc0402_c

Organism
Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (Anacystis nidulans)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciSELO269084:GCDQ-410-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Ordered Locus Names:syc0402_cImported
OrganismiSynechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (Anacystis nidulans)Imported
Taxonomic identifieri269084 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechococcus
ProteomesiUP000001175: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi269084.syc0402_c.

Structurei

3D structure databases

ProteinModelPortaliQ5N527.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG2203.
OMAiWENERIQ.
OrthoDBiEOG6G4VQG.

Family and domain databases

Gene3Di1.10.3210.10. 1 hit.
3.30.450.40. 1 hit.
InterProiIPR003018. GAF.
IPR029016. GAF_dom_like.
IPR003607. HD/PDEase_dom.
IPR006674. HD_domain.
IPR013976. HDOD.
IPR006675. Uncharacterised_HDIG.
[Graphical view]
PfamiPF13185. GAF_2. 1 hit.
PF08668. HDOD. 1 hit.
[Graphical view]
SMARTiSM00065. GAF. 1 hit.
SM00471. HDc. 1 hit.
[Graphical view]
SUPFAMiSSF55781. SSF55781. 1 hit.
TIGRFAMsiTIGR00277. HDIG. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5N527-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSPEELQQEL QLQSMLIDRS EHALLTLKAC NEALVRASGE REFLAEFCRL
60 70 80 90 100
CVVEAGYAHA WVTLNSFNPH ESLRPFASFG RLQSYVDSLQ ITWDDQATGQ
110 120 130 140 150
GPTGQAIKTG QIQIADWQAE QSSLAPWQEI ATHYQIKTSI SLPLKQGVRT
160 170 180 190 200
LGALNIYSTQ PDAFPPLEQE LLAQVAQLLA YGLSSRRSLA IQDRLLDQTI
210 220 230 240 250
QAIVQMVELR DPYTQGHENQ VAQLAQAIAR QLGLDENCIR GIHVAGLLHD
260 270 280 290 300
VGKIRVPAEI LSKPGCLDPI EYELIKLHPQ ACYDILKSIQ FPWPVAEIAM
310 320 330 340 350
QHHERLDGSG YPRQLRGKQI LLAARIIAVA DVIDAMISHR PYRPGLGLGV
360 370 380 390 400
AIAEIKNNSG RLYDPRVVEA CLAVLNMSDA LETEPTSPPP FQTGDRLAKG

GPKGG
Length:405
Mass (Da):44,664
Last modified:February 1, 2005 - v1
Checksum:i3197703762B07F72
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008231 Genomic DNA. Translation: BAD78592.1.
RefSeqiYP_171112.1. NC_006576.1.

Genome annotation databases

EnsemblBacteriaiBAD78592; BAD78592; syc0402_c.
GeneIDi3198505.
KEGGisyc:syc0402_c.
PATRICi32486376. VBISynElo117686_0463.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008231 Genomic DNA. Translation: BAD78592.1.
RefSeqiYP_171112.1. NC_006576.1.

3D structure databases

ProteinModelPortaliQ5N527.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi269084.syc0402_c.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD78592; BAD78592; syc0402_c.
GeneIDi3198505.
KEGGisyc:syc0402_c.
PATRICi32486376. VBISynElo117686_0463.

Phylogenomic databases

eggNOGiCOG2203.
OMAiWENERIQ.
OrthoDBiEOG6G4VQG.

Enzyme and pathway databases

BioCyciSELO269084:GCDQ-410-MONOMER.

Family and domain databases

Gene3Di1.10.3210.10. 1 hit.
3.30.450.40. 1 hit.
InterProiIPR003018. GAF.
IPR029016. GAF_dom_like.
IPR003607. HD/PDEase_dom.
IPR006674. HD_domain.
IPR013976. HDOD.
IPR006675. Uncharacterised_HDIG.
[Graphical view]
PfamiPF13185. GAF_2. 1 hit.
PF08668. HDOD. 1 hit.
[Graphical view]
SMARTiSM00065. GAF. 1 hit.
SM00471. HDc. 1 hit.
[Graphical view]
SUPFAMiSSF55781. SSF55781. 1 hit.
TIGRFAMsiTIGR00277. HDIG. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete nucleotide sequence of the freshwater unicellular cyanobacterium Synechococcus elongatus PCC 6301 chromosome: gene content and organization."
    Sugita C., Ogata K., Shikata M., Jikuya H., Takano J., Furumichi M., Kanehisa M., Omata T., Sugiura M., Sugita M.
    Photosyn. Res. 93:55-67(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 27144 / PCC 6301 / SAUG 1402/1Imported.

Entry informationi

Entry nameiQ5N527_SYNP6
AccessioniPrimary (citable) accession number: Q5N527
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 2005
Last sequence update: February 1, 2005
Last modified: March 4, 2015
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.