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Q5N4R9 (Q5N4R9_SYNP6) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 54. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Biosynthetic arginine decarboxylase HAMAP-Rule MF_01417
Short name=ADC HAMAP-Rule MF_01417
EC=4.1.1.19 HAMAP-Rule MF_01417
Gene names
Name:speA HAMAP-Rule MF_01417
Ordered Locus Names:syc0510_c
OrganismSynechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (Anacystis nidulans) [Complete proteome] [HAMAP]
Taxonomic identifier269084 [NCBI]
Taxonomic lineageBacteria › Cyanobacteria › Oscillatoriophycideae › Chroococcales › Synechococcus ›

Protein attributes

Sequence length651 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the biosynthesis of agmatine from arginine By similarity. HAMAP-Rule MF_01417

Catalytic activity

L-arginine = agmatine + CO2. HAMAP-Rule MF_01417 SAAS SAAS022644 RuleBase RU003740

Cofactor

Magnesium By similarity. HAMAP-Rule MF_01417 SAAS SAAS022644 RuleBase RU003740

Pyridoxal phosphate By similarity. HAMAP-Rule MF_01417 SAAS SAAS022644

Pathway

Amine and polyamine biosynthesis; agmatine biosynthesis; agmatine from L-arginine: step 1/1. HAMAP-Rule MF_01417

Sequence similarities

Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. HAMAP-Rule MF_01417

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region302 – 31211Substrate-binding By similarity HAMAP-Rule MF_01417

Amino acid modifications

Modified residue1201N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01417

Sequences

Sequence LengthMass (Da)Tools
Q5N4R9 [UniParc].

Last modified February 1, 2005. Version 1.
Checksum: 857A03912B6C11EB

FASTA65172,789
        10         20         30         40         50         60 
MEKLMAAEQT AIAPLAVAVE SQQWRIEDSE ALYRIQGWGE PYFGINAAGH ITVSPQGDRG 

        70         80         90        100        110        120 
GSLDLYELVE ALRRRGLNLP LLIRFPDILE DRIERLNACF AKAIARYNYA GEYRGVFPVK 

       130        140        150        160        170        180 
CNQQRHLIES LVNYGRPFQF GLEAGSKPEL LIALAHLDTP GALLICNGYK DRDYIETAIL 

       190        200        210        220        230        240 
GRRLGKTPIL VIEQLEEVDV AIAASQRLGI EPILGVRAKL NARGMGRWGS SAGDRAKFGL 

       250        260        270        280        290        300 
TMPEIVAAVE ELQAANLLHC LQLLHFHIGS QISDISVLKD AIQEAAQIYV QLAALGADMR 

       310        320        330        340        350        360 
YLDVGGGLGV DYDGSKTNFH ASKNYNMQTY ANDVVATIKD ACQAHRLAVP TLTSESGRAI 

       370        380        390        400        410        420 
ASHQSVLVFD VLGSSEVPRA AVEPPQEEDS AIVRTLYEVL EAIALENLQE CYHDAFKLKE 

       430        440        450        460        470        480 
DAVSAFRLGY LSLTERAKAE RLFWSCCHRI QEFLKQLDRI PEDLEDLERV MASIYYVNLS 

       490        500        510        520        530        540 
VFQSAPNTWA IDQLFPIMPI HRLNEEPNQR VTLADLTCDS DGKIDRFIDL LDVKSTLELH 

       550        560        570        580        590        600 
SLQPDQPYVL GMFLGGAYQE IMGNLHNLFG DTNAVHIKLT PKGYSIEHVV KGDTMGEVLG 

       610        620        630        640        650 
YVQYDTEQLL ERLRQQTEAA LQQDQISLDE AQRLLRHYEE GLQRYTYLSL D

« Hide

References

[1]"Complete nucleotide sequence of the freshwater unicellular cyanobacterium Synechococcus elongatus PCC 6301 chromosome: gene content and organization."
Sugita C., Ogata K., Shikata M., Jikuya H., Takano J., Furumichi M., Kanehisa M., Omata T., Sugiura M., Sugita M.
Photosyn. Res. 93:55-67(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 27144 / PCC 6301 / SAUG 1402/1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP008231 Genomic DNA. Translation: BAD78700.1.
RefSeqYP_171220.1. NC_006576.1.

3D structure databases

ProteinModelPortalQ5N4R9.
ModBaseSearch...

Protein-protein interaction databases

STRING269084.syc0510_c.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD78700; BAD78700; syc0510_c.
GeneID3197863.
KEGGsyc:syc0510_c.
PATRIC32486626. VBISynElo117686_0587.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1166.
HOGENOMHOG000029191.
KOK01585.
OMAMIHFHIG.
ProtClustDBPRK05354.

Enzyme and pathway databases

UniPathwayUPA00186; UER00284.

Family and domain databases

Gene3D2.40.37.10. 2 hits.
HAMAPMF_01417. SpeA.
InterProIPR009006. Ala_racemase/Decarboxylase_C.
IPR002985. Arg_decrbxlase.
IPR022643. De-COase2_C.
IPR022657. De-COase2_CS.
IPR022644. De-COase2_N.
IPR022653. De-COase2_pyr-phos_BS.
IPR000183. Orn/DAP/Arg_de-COase.
[Graphical view]
PANTHERPTHR11482:SF3. PTHR11482:SF3. 1 hit.
PfamPF02784. Orn_Arg_deC_N. 1 hit.
PF00278. Orn_DAP_Arg_deC. 1 hit.
[Graphical view]
PIRSFPIRSF001336. Arg_decrbxlase. 1 hit.
PRINTSPR01180. ARGDCRBXLASE.
PR01179. ODADCRBXLASE.
SUPFAMSSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMsTIGR01273. speA. 1 hit.
PROSITEPS00878. ODR_DC_2_1. 1 hit.
PS00879. ODR_DC_2_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ5N4R9_SYNP6
AccessionPrimary (citable) accession number: Q5N4R9
Entry history
Integrated into UniProtKB/TrEMBL: February 1, 2005
Last sequence update: February 1, 2005
Last modified: May 1, 2013
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info