Q5N0U8 (RL15_SYNP6) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
50S ribosomal protein L15

Gene names

Name:	rplO
Synonyms:	rpl15
Ordered Locus Names:	syc1882_d

Organism

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (Anacystis nidulans) [Complete proteome] [HAMAP]

Taxonomic identifier

269084 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Chroococcales › Synechococcus

Protein attributes

Sequence length	147 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Binds to the 23S rRNA By similarity. HAMAP MF_01341_B
Subunit structure	Part of the 50S ribosomal subunit.
Sequence similarities	Belongs to the ribosomal protein L15P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Cellular component	large ribosomal subunit Inferred from electronic annotation. Source: InterPro
Molecular function	rRNA binding Inferred from electronic annotation. Source: UniProtKB-KW structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 147	147	50S ribosomal protein L15 HAMAP MF_01341_B		PRO_0000104837

Sequences

	Sequence		Length	Mass (Da)
	Q5N0U8 [UniParc]. Last modified February 1, 2005. Version 1. Checksum: B0F5251F91E3C993	FASTA	147	15,289
	10 20 30 40 50 60 MKLDNLAPQP GAKKRKRRVG RGIAAGQGAS CGFGMRGQKS RSGRPTRPGF EGGQMPLYRR 70 80 90 100 110 120 VPKLKHFPLI NRKFYTVVNV GALAGLAAGT EVTLESLMAV GIVTQNDGPL KILGDGELSV 130 140 SLSVSAAAFT ATAQQKIEAA GGSIALV

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Organization of a large gene cluster encoding ribosomal proteins in the cyanobacterium Synechococcus sp. strain PCC 6301: comparison of gene clusters among cyanobacteria, eubacteria and chloroplast genomes." Sugita M., Sugishita H., Fujishiro T., Tsuboi M., Sugita C., Endo T., Sugiura M. Gene 195:73-79(1997) [PubMed: 9300823] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]	"Complete nucleotide sequence of the freshwater unicellular cyanobacterium Synechococcus elongatus PCC 6301 chromosome: gene content and organization." Sugita C., Ogata K., Shikata M., Jikuya H., Takano J., Furumichi M., Kanehisa M., Omata T., Sugiura M., Sugita M. Photosyn. Res. 93:55-67(2007) [PubMed: 17211581] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 27144 / PCC 6301 / SAUG 1402/1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AB000111 Genomic DNA. Translation: BAA22466.1. AP008231 Genomic DNA. Translation: BAD80072.1.
RefSeq	YP_172592.1. NC_006576.1.
3D structure databases
ProteinModelPortal	Q5N0U8.
ModBase	Search...
Protein-protein interaction databases
STRING	Q5N0U8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3198765.
GenomeReviews	Gene locus syc1882_d in contig AP008231_GR.
KEGG	syc:syc1882_d.
PATRIC	32489829. VBISynElo117686_2149.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0200.
HOGENOM	HBG727142.
OMA	RKGRGHA.
PhylomeDB	Q5N0U8.
ProtClustDB	PRK05592.
Enzyme and pathway databases
BioCyc	SELO269084:SYC1882_D-MONOMER.
Family and domain databases
HAMAP	MF_01341_B. Ribosomal_L15_B. [Tree]
InterPro	IPR005749. Ribosomal_L15_bac-type. IPR001196. Ribosomal_L15_CS. IPR021131. Ribosomal_L18e/L15P. [Graphical view]
KO	K02876.
PANTHER	PTHR12934. Ribosom_L15_bac. 1 hit.
Pfam	PF00828. Ribosomal_L18e. 1 hit. [Graphical view]
SUPFAM	SSF52080. Ribosomal_L18e/L15. 1 hit.
TIGRFAMs	TIGR01071. RplO_bact. 1 hit.
PROSITE	PS00475. RIBOSOMAL_L15. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RL15_SYNP6

Accession

Primary (citable) accession number: Q5N0U8
Secondary accession number(s): Q9R7M9

Entry history

Integrated into UniProtKB/Swiss-Prot:	December 6, 2005
Last sequence update:	February 1, 2005
Last modified:	January 25, 2012
This is version 44 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program