Q5MZT5 (Q5MZT5_SYNP6) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma factor RuleBase RU000715

Gene names

Name:	rpoD5 EMBL BAD80435.1
Ordered Locus Names:	syc2245_c

Organism

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (Anacystis nidulans) [Complete proteome] [HAMAP]

Taxonomic identifier

269084 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Chroococcales › Synechococcus

Protein attributes

Sequence length	398 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715
Sequence similarities	Belongs to the sigma-70 factor family. RuleBase RU000715

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding SAAS SAAS013325 RuleBase RU000715
Molecular function	Sigma factor RuleBase RU000715 SAAS SAAS013325
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	transcription initiation, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5MZT5 [UniParc]. Last modified February 1, 2005. Version 1. Checksum: AFA4A3B74D35B584	FASTA	398	46,028
	10 20 30 40 50 60 MTAAYFTHST EYEAVSSDVA NLSETPSSEA VETAVSSRQS TDLIRLYLQD IGRVRLLGRD 70 80 90 100 110 120 EEVSEARWVQ RYMQLLAVRN CVAVEEGGVL KDYVDLQEGR DRLTAQLGHR PSFEAWAKIV 130 140 150 160 170 180 DCSLTELRQA LQLGLHRWAE VCQLDLEELK QVCKEGQRAK DHMIKANLRL VVSVAKKYQN 190 200 210 220 230 240 RGLELLDLVQ EGTLGLERAV EKFDPTKGYR FSTYAYWWIR QGITRAIATQ SRTIRLPVHV 250 260 270 280 290 300 TEKLNRIKKA QRKIAQTKGR TANLEEIAQE LEMTPDQVRE VLLRVPKSIS LETRVGKEKD 310 320 330 340 350 360 TELGDLLETT DFTPEERLTQ ESLSNDLQRL LLELNHRERD VIRMRFGLRD GQIYSLAEIG 370 380 390 QVLDLSRERV RQIEAKALQK LRHPRRRNQI RDYLELLH

References

[1]

"Complete nucleotide sequence of the freshwater unicellular cyanobacterium Synechococcus elongatus PCC 6301 chromosome: gene content and organization." Sugita C., Ogata K., Shikata M., Jikuya H., Takano J., Furumichi M., Kanehisa M., Omata T., Sugiura M., Sugita M. Photosyn. Res. 93:55-67(2007) [PubMed: 17211581] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP008231 Genomic DNA. Translation: BAD80435.1.
RefSeq	YP_172955.1. NC_006576.1.
3D structure databases
ProteinModelPortal	Q5MZT5.
SMR	Q5MZT5. Positions 132-230.
ModBase	Search...
Protein-protein interaction databases
STRING	Q5MZT5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3200108.
GenomeReviews	Gene locus syc2245_c in contig AP008231_GR.
KEGG	syc:syc2245_c.
PATRIC	32490644. VBISynElo117686_2552.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0568.
HOGENOM	HBG745096.
OMA	KVGKDKD.
PhylomeDB	Q5MZT5.
ProtClustDB	PRK07598.
Enzyme and pathway databases
BioCyc	SELO269084:SYC2245_C-MONOMER.
Family and domain databases
InterPro	IPR014284. RNA_pol_sigma-70. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR017848. RNA_pol_sigma_RpoD_cyanobac. IPR011991. WHTH_trsnscrt_rep_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 2 hits.
KO	K03087.
Pfam	PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02997. Sig70-cyanoRpoD. 1 hit. TIGR02937. Sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q5MZT5_SYNP6

Accession

Primary (citable) accession number: Q5MZT5

Entry history

Integrated into UniProtKB/TrEMBL:	February 1, 2005
Last sequence update:	February 1, 2005
Last modified:	December 14, 2011
This is version 55 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)