Q5MYX2 (Q5MYX2_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
2 '-5 ' oligoadenylate synthetase 1K EMBL AAH88437.1

Submitted name:
2'-5' oligoadenylate synthetase 1K EMBL AAP41938.1

Gene names

Name:

Oas1k RGD 1359279

Organism

Rattus norvegicus (Rat)

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	353 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Gene Ontology (GO)
Biological_process	defense response to virus Inferred from electronic annotation. Source: InterPro immune response Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro double-stranded RNA binding Inferred from electronic annotation. Source: InterPro nucleotidyltransferase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5MYX2 [UniParc]. Last modified February 1, 2005. Version 1. Checksum: 3151BA32FCA6A518	FASTA	353	40,673
	10 20 30 40 50 60 MEKDLKSTPA SELDKFIQDH LLPDTTFRDE VRADIDFICT FLKEKCFHGA ALKVSKVVKG 70 80 90 100 110 120 GSSGKGTTLQ GKSDADLVVF LNNLTSFEDQ LKRRGEVIEK IRKHLCQLQQ EKQFKLKFEF 130 140 150 160 170 180 QTPEQANSRS LSFKLSSPQL QHVVKFDVLP AYDVLGHVNI NSKPNAQIYA SLIRKCTDLN 190 200 210 220 230 240 KEGAFSTCFT ELQRNFLKRR PTKLKSLIRL VKHWYQLCKE KLGDSLPPQY ALELLTVHAW 250 260 270 280 290 300 ERGNGLTEFN TAQGFRTVLE LVTKYQQLRI YWTMYYDFQH LDVSKYLYRQ LKKPRPVILD 310 320 330 340 350 PADPTGNVAG GNQEGWRRLA SEARLWLQCP CFMNRDGSPV SSWEVQTEVP VCF

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	Perelygin A., Brinton M. Submitted (DEC-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: Sprague-Dawley EMBL AAP41938.1.
[2]	"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J. Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Lung EMBL AAH88437.1.
[3]	"The mammalian 2'-5' oligoadenylate synthetase gene family: evidence for concerted evolution of paralogous Oas1 genes in Rodentia and Artiodactyla." Perelygin A.A., Zharkikh A.A., Scherbik S.V., Brinton M.A. J. Mol. Evol. 63:562-576(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Sprague-Dawley EMBL AAP41938.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BC088437 mRNA. Translation: AAH88437.1. AY196696 mRNA. Translation: AAP41938.1.
IPI	IPI00390365.
RefSeq	NP_001009489.1. NM_001009489.1.
UniGene	Rn.154804.
3D structure databases
SMR	Q5MYX2. Positions 4-343.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	494198.
KEGG	rno:494198.
Organism-specific databases
CTD	494198.
RGD	1359279. Oas1k.
Phylogenomic databases
eggNOG	NOG48070.
HOGENOM	HOG000022614.
HOVERGEN	HBG000994.
Gene expression databases
Genevestigator	Q5MYX2.
Family and domain databases
Gene3D	1.10.1410.20. 1 hit.
InterPro	IPR006117. 2-5-oligoadenylate_synth_CS. IPR006116. 2-5-oligoadenylate_synth_N. IPR018952. 2-5-oligoAdlate_synth_1_dom2/C. IPR026774. 2-5A_synthase. IPR002934. Nucleotidyltransferase. [Graphical view]
PANTHER	PTHR11258. PTHR11258. 1 hit.
Pfam	PF01909. NTP_transf_2. 1 hit. PF10421. OAS1_C. 1 hit. [Graphical view]
PROSITE	PS00833. 25A_SYNTH_2. 1 hit. PS50152. 25A_SYNTH_3. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	697262.

Entry information

Entry name

Q5MYX2_RAT

Accession

Primary (citable) accession number: Q5MYX2

Entry history

Integrated into UniProtKB/TrEMBL:	February 1, 2005
Last sequence update:	February 1, 2005
Last modified:	April 3, 2013
This is version 56 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)