Skip Header

Contribute Send feedback
Read comments (0) or add your own

Unreviewed, UniProtKB/TrEMBL Q5M9H2 (Q5M9H2_RAT)

Last modified January 19, 2010. Version 42. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information

Hide | Top

Names and origin

Protein namesSubmitted name:
    Acyl-Coenzyme A dehydrogenase, very long chain EMBL AAH87036.1
Gene names
Name: Acadvl EMBL AAH87036.1 RGD 2014
OrganismRattus norvegicus (Rat) EMBL AAH87036.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Hide | Top

Protein attributes

Sequence length655 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level.

Hide | Top

General annotation (Comments)

Sequence similarities

Belongs to the acyl-CoA dehydrogenase family.

Hide | Top

Sequences

Sequence LengthMass (Da)Tools
Q5M9H2-1 [UniParc].

Last modified February 1, 2005. Version 1.
Checksum: 42333237EE459513

FASTA65570,821
        10         20         30         40         50         60 
MQSARMTPSV GRQLLRLGAR SSRSAALQGQ PRPTSAQRLY ASEATQAVLE KPETLSSDAS 

        70         80         90        100        110        120 
TREKPARAES KSFAVGMFKG QLTTDQVFPY PSVLNEEQTQ FLKELVGPVA RFFEEVNDPA 

       130        140        150        160        170        180 
KNDSLEKVEE DTLQGLKELG AFGLQVPSEL GGLGLSNTQY ARLAEIVGMH DLGVSVTLGA 

       190        200        210        220        230        240 
HQSIGFKGIL LYGTKAQKEK YLPRVASGQA LAAFCLTEPS SGSDVASIRS SAVPSPCGKY 

       250        260        270        280        290        300 
YTLNGSKIWI SNGGLADIFT VFAKTPIKDA ATGAVKEKIT AFVVERSFGG VTHGLPEKKM 

       310        320        330        340        350        360 
GIKASNTSEV YFDGVKVPAE NVLGEVGDGF KVAVNILNNG RFGMAATLAG TMKAIIAKAV 

       370        380        390        400        410        420 
DHATNRTQFG DKIHNFGVIQ EKLARMAILQ YVTESMAYML SANMDQGFKD FQIEAAISKI 

       430        440        450        460        470        480 
FGSEAAWKVT DECIQIMGGM GFMKEPGVER VLRDIRIFRI FEGTNDILRL FVALQGCMDK 

       490        500        510        520        530        540 
GKELTGLGNA LKNPLGNVGL LIGEASKQLR RRTGIGSGLS LSGIVHPELS RSGELAVQAL 

       550        560        570        580        590        600 
EQFATVVEAK LMKHKKGIVN EQFLLQRLAD GAIDLYAMVV VLSRASRSLS EGYPTAQHEK 

       610        620        630        640        650 
MLCDSWCIEA ATRIRENMAS LQSNPQQQEL FRNFRSISKA MVENGGLVTS NPLRV

« Hide

Hide | Top

References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Heart EMBL AAH87036.1.

Hide | Top

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BC087036 mRNA. Translation: AAH87036.1.
IPIIPI00213057.
UniGeneRn.33319

3D structure databases

SMRQ5M9H2. Positions 69-653.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ5M9H2.

Genome annotation databases

EnsemblENSRNOT00000024973; ENSRNOP00000024973; ENSRNOG00000018114; Rattus norvegicus. [Genome view]

Phylogenomic databases

HOVERGENQ5M9H2.
InParanoidQ5M9H2.

Gene expression databases

ArrayExpressQ5M9H2.
GenevestigatorQ5M9H2.

Family and domain databases

InterProIPR006089. Acyl-CoA_DH_CS.
IPR006092. Acyl-CoA_DH_N.
IPR006090. Acyl-CoA_Oxase/DH_1.
IPR006091. Acyl-CoA_Oxase/DH_cen-dom.
IPR009075. AcylCo_DH/oxidase_C.
IPR013786. AcylCoA_DH/ox_N.
IPR009100. AcylCoA_DH/oxidase.
IPR013764. AcylCoA_oxidase/DH_1/2_C.
[Graphical view]
Gene3DG3DSA:2.40.110.10. Acyl_CoA_DH/ox_M. 1 hit.
G3DSA:1.10.540.10. AcylCoA_DH/ox_N. 1 hit.
G3DSA:1.20.140.10. AcylCoA_DH_1/2_C. 1 hit.
PfamPF00441. Acyl-CoA_dh_1. 1 hit.
PF02770. Acyl-CoA_dh_M. 1 hit.
PF02771. Acyl-CoA_dh_N. 1 hit.
[Graphical view]
PROSITEPS00072. ACYL_COA_DH_1. 1 hit.
PS00073. ACYL_COA_DH_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Hide | Top

Entry information

Entry nameQ5M9H2_RAT
AccessionPrimary (citable) accession number: Q5M9H2
Entry history
Integrated into UniProtKB/TrEMBL: February 1, 2005
Last sequence update: February 1, 2005
Last modified: January 19, 2010
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information