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Q5M857 (Q5M857_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 77. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Cyclin B2, isoform CRA_b EMBL EDL84187.1
Gene names
Name:Ccnb2 EMBL AAH88212.1 RGD 1308176
ORF Names:rCG_56708 EMBL EDL84187.1
OrganismRattus norvegicus (Rat) EMBL AAH88212.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length398 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the cyclin family. RuleBase RU000383

Sequences

Sequence LengthMass (Da)Tools
Q5M857 [UniParc].

Last modified February 1, 2005. Version 1.
Checksum: 1CB20F9B74AAD21F

FASTA39845,124
        10         20         30         40         50         60 
MALLRRPTVS SDLKNIDTGV NPKAKSHVTV RRAVLEEIGN KVRARPAQVA KKPQNTKVPV 

        70         80         90        100        110        120 
QPTKAINASK QPKPTASVKP VQMETLAPKD PLPAPEDVSM KEESLCQAFS DALLCKIEDI 

       130        140        150        160        170        180 
DNEDGENPQL CSDYVKDIYQ YLRQLEALQS INPHFLDGRD INGRMRAILV DWLVQVHSKF 

       190        200        210        220        230        240 
RLLQETLYMC IAIMDRFLQA QPVCRKKLQL VGITALLLAS KYEEMFSPNI EDFVYITDNA 

       250        260        270        280        290        300 
YTSSQIREME TLILKELKFE LGRPLPLHFL RRASKAGEVD VEQHTLAKYL MELTLVDYDM 

       310        320        330        340        350        360 
VHYHPSQVAA AASCLSQKVL GQGKWNLKQQ YYTGYMESEI LEVMQHMAKN VVKVNENLTK 

       370        380        390 
FIAVKNKYAS SRLLKISTIP QLNSRTIKDL ASPLMGRP 

« Hide

References

« Hide 'large scale' references
[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Testis EMBL AAH97952.1 and Thymus EMBL AAH88212.1.
[2]"Gene and alternative splicing annotation with AIR."
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G.
Genome Res. 15:54-66(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDL84187.1.
[3]Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. expand/collapse author list , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDL84187.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BC088212 mRNA. Translation: AAH88212.1.
BC097952 mRNA. Translation: AAH97952.1.
CH474041 Genomic DNA. Translation: EDL84187.1.
RefSeqNP_001009470.1. NM_001009470.1.
UniGeneRn.6743.

3D structure databases

ProteinModelPortalQ5M857.
SMRQ5M857. Positions 131-390.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING10116.ENSRNOP00000017117.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID363088.
KEGGrno:363088.
UCSCRGD:1308176. rat.

Organism-specific databases

CTD9133.
RGD1308176. Ccnb2.

Phylogenomic databases

eggNOGCOG5024.
HOGENOMHOG000167672.
HOVERGENHBG061650.
InParanoidQ5M857.
KOK05868.
PhylomeDBQ5M857.
TreeFamTF101001.

Gene expression databases

GenevestigatorQ5M857.

Family and domain databases

Gene3D1.10.472.10. 2 hits.
InterProIPR013763. Cyclin-like.
IPR014400. Cyclin_A/B/D/E/F.
IPR004367. Cyclin_C-dom.
IPR006671. Cyclin_N.
[Graphical view]
PfamPF02984. Cyclin_C. 1 hit.
PF00134. Cyclin_N. 1 hit.
[Graphical view]
PIRSFPIRSF001771. Cyclin_A_B_D_E. 1 hit.
SMARTSM00385. CYCLIN. 2 hits.
[Graphical view]
SUPFAMSSF47954. SSF47954. 2 hits.
PROSITEPS00292. CYCLINS. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio682407.

Entry information

Entry nameQ5M857_RAT
AccessionPrimary (citable) accession number: Q5M857
Entry history
Integrated into UniProtKB/TrEMBL: February 1, 2005
Last sequence update: February 1, 2005
Last modified: July 9, 2014
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)