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Protein

39S ribosomal protein L16, mitochondrial

Gene

Mrpl16

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Component of the large subunit of mitochondrial ribosome.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-RNO-5389840. Mitochondrial translation elongation.
R-RNO-5419276. Mitochondrial translation termination.

Names & Taxonomyi

Protein namesi
Recommended name:
39S ribosomal protein L16, mitochondrial
Short name:
L16mt
Short name:
MRP-L16
Gene namesi
Name:Mrpl16
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 1

Organism-specific databases

RGDi735195. Mrpl16.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 3636MitochondrionSequence analysisAdd
BLAST
Chaini37 – 25121539S ribosomal protein L16, mitochondrialPRO_0000239844Add
BLAST

Proteomic databases

PaxDbiQ5M818.
PRIDEiQ5M818.

PTM databases

iPTMnetiQ5M818.

Expressioni

Gene expression databases

GenevisibleiQ5M818. RN.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000028517.

Structurei

3D structure databases

ProteinModelPortaliQ5M818.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L16P family.Curated

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiKOG3422. Eukaryota.
COG0197. LUCA.
GeneTreeiENSGT00390000002038.
HOGENOMiHOG000021349.
HOVERGENiHBG056553.
InParanoidiQ5M818.
KOiK02878.
OMAiPYDLTHK.
OrthoDBiEOG7HQN8X.
PhylomeDBiQ5M818.
TreeFamiTF312969.

Family and domain databases

Gene3Di3.90.1170.10. 1 hit.
InterProiIPR016180. Ribosomal_L10e/L16.
IPR000114. Ribosomal_L16.
[Graphical view]
PANTHERiPTHR12220. PTHR12220. 1 hit.
PfamiPF00252. Ribosomal_L16. 1 hit.
[Graphical view]
PRINTSiPR00060. RIBOSOMALL16.
SUPFAMiSSF54686. SSF54686. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q5M818-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MWRLLTRAPA PLWRMHFSDT WAALPTSAGL KTLLPVPTFE NVSIPERSKL
60 70 80 90 100
KFVERVPLVP KVRREPKNLK DIRGPSAEAT DFTEGNFAIL ALGGGYLHWG
110 120 130 140 150
HFEMMRLTIN RFMDPKNMFA IWRVPAPFKP ITRKGVGQRM GGGKGAIDHY
160 170 180 190 200
VTPVKTGCLI VEMGGRCEFE EVKRVLNQVA HKLPFPAKAV SRKTLEKMHQ
210 220 230 240 250
NQKERELNNQ NPWTFERIAT ANMFGIRKFL SPYDLTQKGR YWGKFYMPKR

V
Length:251
Mass (Da):28,895
Last modified:February 1, 2005 - v1
Checksum:i190E56ADE089CCAE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC088312 mRNA. Translation: AAH88312.1.
RefSeqiNP_001009647.1. NM_001009647.1.
UniGeneiRn.101972.

Genome annotation databases

EnsembliENSRNOT00000028517; ENSRNOP00000028517; ENSRNOG00000021005.
GeneIDi293754.
KEGGirno:293754.
UCSCiRGD:735195. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC088312 mRNA. Translation: AAH88312.1.
RefSeqiNP_001009647.1. NM_001009647.1.
UniGeneiRn.101972.

3D structure databases

ProteinModelPortaliQ5M818.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000028517.

PTM databases

iPTMnetiQ5M818.

Proteomic databases

PaxDbiQ5M818.
PRIDEiQ5M818.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000028517; ENSRNOP00000028517; ENSRNOG00000021005.
GeneIDi293754.
KEGGirno:293754.
UCSCiRGD:735195. rat.

Organism-specific databases

CTDi54948.
RGDi735195. Mrpl16.

Phylogenomic databases

eggNOGiKOG3422. Eukaryota.
COG0197. LUCA.
GeneTreeiENSGT00390000002038.
HOGENOMiHOG000021349.
HOVERGENiHBG056553.
InParanoidiQ5M818.
KOiK02878.
OMAiPYDLTHK.
OrthoDBiEOG7HQN8X.
PhylomeDBiQ5M818.
TreeFamiTF312969.

Enzyme and pathway databases

ReactomeiR-RNO-5389840. Mitochondrial translation elongation.
R-RNO-5419276. Mitochondrial translation termination.

Miscellaneous databases

PROiQ5M818.

Gene expression databases

GenevisibleiQ5M818. RN.

Family and domain databases

Gene3Di3.90.1170.10. 1 hit.
InterProiIPR016180. Ribosomal_L10e/L16.
IPR000114. Ribosomal_L16.
[Graphical view]
PANTHERiPTHR12220. PTHR12220. 1 hit.
PfamiPF00252. Ribosomal_L16. 1 hit.
[Graphical view]
PRINTSiPR00060. RIBOSOMALL16.
SUPFAMiSSF54686. SSF54686. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Liver.

Entry informationi

Entry nameiRM16_RAT
AccessioniPrimary (citable) accession number: Q5M818
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 13, 2006
Last sequence update: February 1, 2005
Last modified: July 6, 2016
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.