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Q5LUG6 (Q5LUG6_SILPO) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 59. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Choline dehydrogenase RuleBase RU003969
EC=1.1.99.1 RuleBase RU003969
Gene names
Name:betA EMBL AAV94388.1
Ordered Locus Names:SPO1088
OrganismSilicibacter pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) [Complete proteome] [HAMAP]
Taxonomic identifier246200 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Ruegeria

Protein attributes

Sequence length552 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine By similarity. SAAS SAAS007867

Catalytic activity

Choline + acceptor = betaine aldehyde + reduced acceptor. RuleBase RU003969 SAAS SAAS007867

Cofactor

FAD By similarity. SAAS SAAS007867 RuleBase RU003968

Pathway

Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway; betaine aldehyde from choline (cytochrome c reductase route): step 1/1. RuleBase RU003969 SAAS SAAS007867

Sequence similarities

Belongs to the GMC oxidoreductase family. RuleBase RU003968

Sequences

Sequence LengthMass (Da)Tools
Q5LUG6 [UniParc].

Last modified February 1, 2005. Version 1.
Checksum: C7726C5A36302A71

FASTA55260,077
        10         20         30         40         50         60 
MEADFVIVGA GSAGCAMAYR LSGAGASVLV IEHGGTDAGP FIQMPAALSY PMNMSRYDWG 

        70         80         90        100        110        120 
YLSEPEPHLN NRRLVCPRGK VIGGSSSING MVYVRGHAMD FDTWSEMGAD GWAYADVLPY 

       130        140        150        160        170        180 
FKRMETWHDG GHGGDASWRG TDGPLHVTRG PRTNPLFKAF VDAGKQAGYE VTGDYNGEKQ 

       190        200        210        220        230        240 
EGFGPMEQTV WKGRRWSAAN AYLKPALKRE NCDILRGLAA RVVMDAGRAT GVEIIRGGKA 

       250        260        270        280        290        300 
EVIRARREVI IAASSINSPK LLMLSGIGPA AHLAEHGIAV VADRPGVGAN LQDHLELYIQ 

       310        320        330        340        350        360 
QAAIQPVTLY KYWNLLGKAA IGAQWLFTKT GLGASNQFES AAFIRSQPGV PYPDIQYHFL 

       370        380        390        400        410        420 
PIAVRYDGQA AAEGHGFQAH VGPMRSPSRG AVTLRSDRPE DAPVIRFNYM SHEKDWADFR 

       430        440        450        460        470        480 
TCIRLTREIF GQDAFKPYAG KEIQPGAAVQ SDEELNAFIA EHAESAYHPC GSCRMGRASD 

       490        500        510        520        530        540 
RNAVVDGQGR VIGVEGLRVA DSSIFPQITN GNLNAPSIMV GEKMSDHILG RDPLPRANDI 

       550 
PWINPRWEAS QR

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Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000031 Genomic DNA. Translation: AAV94388.1.
RefSeqYP_166339.1. NC_003911.11.

3D structure databases

ProteinModelPortalQ5LUG6.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3195720.
GenomeReviewsGene locus SPO1088 in contig CP000031_GR.
KEGGsil:SPO1088.
NMPDRfig|246200.3.peg.1507.
PATRIC23375477. VBIRuePom114501_1109.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG734713.
OMAGPFIQMP.
ProtClustDBPRK02106.

Enzyme and pathway databases

BioCycRPOM246200:SPO_1088-MONOMER.

Family and domain databases

InterProIPR011533. Choline_dehydrogenase.
IPR012132. GMC_OxRdtase.
IPR000172. GMC_OxRdtase_N.
IPR007867. GMC_OxRtase_C.
[Graphical view]
KOK00108.
PfamPF05199. GMC_oxred_C. 1 hit.
PF00732. GMC_oxred_N. 1 hit.
[Graphical view]
PIRSFPIRSF000137. Alcohol_oxidase. 1 hit.
TIGRFAMsTIGR01810. BetA. 1 hit.
PROSITEPS00623. GMC_OXRED_1. 1 hit.
PS00624. GMC_OXRED_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ5LUG6_SILPO
AccessionPrimary (citable) accession number: Q5LUG6
Entry history
Integrated into UniProtKB/TrEMBL: February 1, 2005
Last sequence update: February 1, 2005
Last modified: December 14, 2011
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info