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Protein
Submitted name:

Propionyl-CoA carboxylase, alpha subunit

Gene

pccA

Organism
Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • ATP binding Source: InterPro
  • biotin carboxylase activity Source: InterPro
  • metal ion binding Source: InterPro
  • propionyl-CoA carboxylase activity Source: TIGR

GO - Biological processi

  • propionate metabolic process Source: TIGR
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BRENDAi6.4.1.3. 8123.

Names & Taxonomyi

Protein namesi
Submitted name:
Propionyl-CoA carboxylase, alpha subunitImported (EC:6.4.1.3Imported)
Gene namesi
Name:pccAImported
Ordered Locus Names:SPO1101Imported
OrganismiRuegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi)Imported
Taxonomic identifieri246200 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRuegeria
Proteomesi
  • UP000001023 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

DIPiDIP-59242N.
STRINGi246200.SPO1101.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3N6RX-ray3.20A/C/E/G/I/K1-681[»]
ProteinModelPortaliQ5LUF3.
SMRiQ5LUF3.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5LUF3.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 466Biotin carboxylationInterPro annotationAdd BLAST466
Domaini120 – 317ATP-graspInterPro annotationAdd BLAST198
Domaini602 – 681Lipoyl-bindingInterPro annotationAdd BLAST80

Phylogenomic databases

eggNOGiENOG4108JIK. Bacteria.
COG4770. LUCA.
HOGENOMiHOG000008989.
KOiK01965.
OMAiIVIDKIM.
OrthoDBiPOG091H02XZ.

Family and domain databases

Gene3Di3.30.1490.20. 1 hit.
3.30.470.20. 1 hit.
3.40.50.20. 1 hit.
InterProiIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR005481. BC-like_N.
IPR001882. Biotin_BS.
IPR011764. Biotin_carboxylation_dom.
IPR005482. Biotin_COase_C.
IPR000089. Biotin_lipoyl.
IPR005479. CbamoylP_synth_lsu-like_ATP-bd.
IPR016185. PreATP-grasp_dom.
IPR011054. Rudment_hybrid_motif.
IPR011053. Single_hybrid_motif.
[Graphical view]
PfamiPF02785. Biotin_carb_C. 1 hit.
PF00289. Biotin_carb_N. 1 hit.
PF00364. Biotin_lipoyl. 1 hit.
PF02786. CPSase_L_D2. 1 hit.
[Graphical view]
SMARTiSM00878. Biotin_carb_C. 1 hit.
[Graphical view]
SUPFAMiSSF51230. SSF51230. 1 hit.
SSF51246. SSF51246. 1 hit.
SSF52440. SSF52440. 1 hit.
PROSITEiPS50975. ATP_GRASP. 1 hit.
PS50979. BC. 1 hit.
PS00188. BIOTIN. 1 hit.
PS50968. BIOTINYL_LIPOYL. 1 hit.
PS00866. CPSASE_1. 1 hit.
PS00867. CPSASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5LUF3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFNKILIANR GEIACRVIKT ARKMGISTVA IYSDADKQAL HVQMADEAVH
60 70 80 90 100
IGPPPANQSY IVIDKVMAAI RATGAQAVHP GYGFLSENSK FAEALEAEGV
110 120 130 140 150
IFVGPPKGAI EAMGDKITSK KIAQEANVST VPGYMGLIED ADEAVKISNQ
160 170 180 190 200
IGYPVMIKAS AGGGGKGMRI AWNDQEAREG FQSSKNEAAN SFGDDRIFIE
210 220 230 240 250
KFVTQPRHIE IQVLCDSHGN GIYLGERECS IQRRNQKVVE EAPSPFLDEA
260 270 280 290 300
TRRAMGEQAV ALAKAVGYAS AGTVEFIVDG QKNFYFLEMN TRLQVEHPVT
310 320 330 340 350
ELITGVDLVE QMIRVAAGEP LSITQGDVKL TGWAIENRLY AEDPYRGFLP
360 370 380 390 400
SIGRLTRYRP PAETAAGPLL VNGKWQGDAP SGEAAVRNDT GVYEGGEISM
410 420 430 440 450
YYDPMIAKLC TWAPTRAAAI EAMRIALDSF EVEGIGHNLP FLSAVMDHPK
460 470 480 490 500
FISGDMTTAF IAEEYPEGFE GVNLPETDLR RVAAAAAAMH RVAEIRRTRV
510 520 530 540 550
SGRMDNHERR VGTEWVVTLQ GADFPVTIAA DHDGSTVSFD DGSSMRVTSD
560 570 580 590 600
WTPGDQLANL MVDGAPLVLK VGKISGGFRI RTRGADLKVH VRTPRQAELA
610 620 630 640 650
RLMPEKLPPD TSKMLLCPMP GLIVKVDVEV GQEVQEGQAL CTIEAMKMEN
660 670 680
ILRAEKKGVV AKINASAGNS LAVDDVIMEF E
Length:681
Mass (Da):73,862
Last modified:February 1, 2005 - v1
Checksum:iE9621118EF90D008
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000031 Genomic DNA. Translation: AAV94401.1.
RefSeqiWP_011046848.1. NC_003911.12.

Genome annotation databases

EnsemblBacteriaiAAV94401; AAV94401; SPO1101.
KEGGisil:SPO1101.
PATRICi23375503. VBIRuePom114501_1122.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000031 Genomic DNA. Translation: AAV94401.1.
RefSeqiWP_011046848.1. NC_003911.12.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3N6RX-ray3.20A/C/E/G/I/K1-681[»]
ProteinModelPortaliQ5LUF3.
SMRiQ5LUF3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-59242N.
STRINGi246200.SPO1101.

Protocols and materials databases

DNASUi3193848.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAV94401; AAV94401; SPO1101.
KEGGisil:SPO1101.
PATRICi23375503. VBIRuePom114501_1122.

Phylogenomic databases

eggNOGiENOG4108JIK. Bacteria.
COG4770. LUCA.
HOGENOMiHOG000008989.
KOiK01965.
OMAiIVIDKIM.
OrthoDBiPOG091H02XZ.

Enzyme and pathway databases

BRENDAi6.4.1.3. 8123.

Miscellaneous databases

EvolutionaryTraceiQ5LUF3.

Family and domain databases

Gene3Di3.30.1490.20. 1 hit.
3.30.470.20. 1 hit.
3.40.50.20. 1 hit.
InterProiIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR005481. BC-like_N.
IPR001882. Biotin_BS.
IPR011764. Biotin_carboxylation_dom.
IPR005482. Biotin_COase_C.
IPR000089. Biotin_lipoyl.
IPR005479. CbamoylP_synth_lsu-like_ATP-bd.
IPR016185. PreATP-grasp_dom.
IPR011054. Rudment_hybrid_motif.
IPR011053. Single_hybrid_motif.
[Graphical view]
PfamiPF02785. Biotin_carb_C. 1 hit.
PF00289. Biotin_carb_N. 1 hit.
PF00364. Biotin_lipoyl. 1 hit.
PF02786. CPSase_L_D2. 1 hit.
[Graphical view]
SMARTiSM00878. Biotin_carb_C. 1 hit.
[Graphical view]
SUPFAMiSSF51230. SSF51230. 1 hit.
SSF51246. SSF51246. 1 hit.
SSF52440. SSF52440. 1 hit.
PROSITEiPS50975. ATP_GRASP. 1 hit.
PS50979. BC. 1 hit.
PS00188. BIOTIN. 1 hit.
PS50968. BIOTINYL_LIPOYL. 1 hit.
PS00866. CPSASE_1. 1 hit.
PS00867. CPSASE_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ5LUF3_RUEPO
AccessioniPrimary (citable) accession number: Q5LUF3
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 2005
Last sequence update: February 1, 2005
Last modified: November 30, 2016
This is version 93 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.