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Protein
Submitted name:

Mandelate racemase/muconate lactonizing enzyme, putative

Gene

SPO1594

Organism
Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Metal-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Mandelate racemase/muconate lactonizing enzyme, putativeImported
Gene namesi
Ordered Locus Names:SPO1594Imported
OrganismiRuegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi)Imported
Taxonomic identifieri246200 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRuegeria
Proteomesi
  • UP000001023 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi246200.SPO1594.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3EEZX-ray2.80A2-368[»]
ProteinModelPortaliQ5LT20.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5LT20.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini144 – 23794MR_MLEInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG4105DTQ. Bacteria.
COG4948. LUCA.
HOGENOMiHOG000140215.
OMAiHACHAVW.
OrthoDBiEOG6JHRH7.

Family and domain databases

Gene3Di3.20.20.120. 1 hit.
3.30.390.10. 1 hit.
InterProiIPR029065. Enolase_C-like.
IPR029017. Enolase_N-like.
IPR013342. Mandelate_racemase_C.
IPR013341. Mandelate_racemase_N_dom.
IPR001354. MR/MLE/MAL.
[Graphical view]
PANTHERiPTHR13794. PTHR13794. 1 hit.
PfamiPF13378. MR_MLE_C. 1 hit.
PF02746. MR_MLE_N. 1 hit.
[Graphical view]
SMARTiSM00922. MR_MLE. 1 hit.
[Graphical view]
SUPFAMiSSF51604. SSF51604. 1 hit.
SSF54826. SSF54826. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5LT20-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKITRITVYQ VDLPLEHPYW LSGGRLKFEL LDATLVKLET DAGITGWGEG
60 70 80 90 100
TPWGHTYVPA HGPGIRAGIE TMAPFVLGLD PRRLLDVERA MDIALPGHLY
110 120 130 140 150
AKSPIDMACW DIAGQAAGLP IADLMGGGSR TPRPIASSVG AKSVEETRAV
160 170 180 190 200
IDRYRQRGYV AHSVKIGGDV ERDIARIRDV EDIRKPGEIV LYDVNRGWTR
210 220 230 240 250
QQALRVMRAT EDLHVMFEQP GETLDDIAAI RPLHSAPVSV DECLVTLQDA
260 270 280 290 300
ARVARDGLAE VFGIKLNRVG GLTRAARMRD IALAHGIDMF VMATGGSVLA
310 320 330 340 350
DAEALHLAAT IPDHACHAVW ACQDMLTVDI AGGRGPRNID GHLHLPETPG
360
LGVHPDEDAL GDPVAVYS
Length:368
Mass (Da):39,786
Last modified:February 1, 2005 - v1
Checksum:iAE60A1B97CADF6EF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000031 Genomic DNA. Translation: AAV94881.1.
RefSeqiWP_011047331.1. NC_003911.12.

Genome annotation databases

EnsemblBacteriaiAAV94881; AAV94881; SPO1594.
KEGGisil:SPO1594.
PATRICi23376511. VBIRuePom114501_1620.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000031 Genomic DNA. Translation: AAV94881.1.
RefSeqiWP_011047331.1. NC_003911.12.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3EEZX-ray2.80A2-368[»]
ProteinModelPortaliQ5LT20.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi246200.SPO1594.

Protocols and materials databases

DNASUi3193978.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAV94881; AAV94881; SPO1594.
KEGGisil:SPO1594.
PATRICi23376511. VBIRuePom114501_1620.

Phylogenomic databases

eggNOGiENOG4105DTQ. Bacteria.
COG4948. LUCA.
HOGENOMiHOG000140215.
OMAiHACHAVW.
OrthoDBiEOG6JHRH7.

Miscellaneous databases

EvolutionaryTraceiQ5LT20.

Family and domain databases

Gene3Di3.20.20.120. 1 hit.
3.30.390.10. 1 hit.
InterProiIPR029065. Enolase_C-like.
IPR029017. Enolase_N-like.
IPR013342. Mandelate_racemase_C.
IPR013341. Mandelate_racemase_N_dom.
IPR001354. MR/MLE/MAL.
[Graphical view]
PANTHERiPTHR13794. PTHR13794. 1 hit.
PfamiPF13378. MR_MLE_C. 1 hit.
PF02746. MR_MLE_N. 1 hit.
[Graphical view]
SMARTiSM00922. MR_MLE. 1 hit.
[Graphical view]
SUPFAMiSSF51604. SSF51604. 1 hit.
SSF54826. SSF54826. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700808 / DSM 15171 / DSS-3Imported.
  2. "Crystal structure of a putative mandelate racemase/muconate lactonizing enzyme from Silicibacter pomeroyi."
    Bonanno J.B., Rutter M., Bain K.T., Hu S., Ozyurt S., Wasserman S., Sauder J.M., Burley S.K., Almo S.C.
    Submitted (SEP-2008) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.80 ANGSTROMS) OF 2-368.
  3. "An updated genome annotation for the model marine bacterium Ruegeria pomeroyi DSS-3."
    Rivers A.R., Smith C.B., Moran M.A.
    Stand. Genomic Sci. 9:11-11(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: ATCC 700808 / DSM 15171 / DSS-3Imported.

Entry informationi

Entry nameiQ5LT20_RUEPO
AccessioniPrimary (citable) accession number: Q5LT20
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 2005
Last sequence update: February 1, 2005
Last modified: March 16, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.