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Protein
Submitted name:

Uncharacterized protein

Gene

SPO1678

Organism
Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Ordered Locus Names:SPO1678Imported
OrganismiRuegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi)Imported
Taxonomic identifieri246200 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRuegeria
Proteomesi
  • UP000001023 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi246200.SPO1678.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2OA4NMR-A1-93[»]
ProteinModelPortaliQ5LST8.
SMRiQ5LST8. Positions 1-93.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5LST8.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG41090MC. Bacteria.
ENOG4111NMJ. LUCA.
HOGENOMiHOG000146053.
OMAiDEACQRY.
OrthoDBiEOG6G4VZH.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR009534. DUF1153.
IPR010921. Trp_repressor/repl_initiator.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF06627. DUF1153. 1 hit.
[Graphical view]
SUPFAMiSSF48295. SSF48295. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5LST8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMFLRKVEGP RSVTLPDGSI MTRADLPPAN TRRWVASRKI AVVRGVIYGL
60 70 80 90
ITLAEAKQIY GLSDEEFNSW VSALAEHGKD ALKVTALKKY RQL
Length:93
Mass (Da):10,402
Last modified:February 1, 2005 - v1
Checksum:iBF71AE05ABCE5BD2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000031 Genomic DNA. Translation: AAV94963.1.

Genome annotation databases

EnsemblBacteriaiAAV94963; AAV94963; SPO1678.
KEGGisil:SPO1678.
PATRICi23376681. VBIRuePom114501_1705.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000031 Genomic DNA. Translation: AAV94963.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2OA4NMR-A1-93[»]
ProteinModelPortaliQ5LST8.
SMRiQ5LST8. Positions 1-93.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi246200.SPO1678.

Protocols and materials databases

DNASUi3192768.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAV94963; AAV94963; SPO1678.
KEGGisil:SPO1678.
PATRICi23376681. VBIRuePom114501_1705.

Phylogenomic databases

eggNOGiENOG41090MC. Bacteria.
ENOG4111NMJ. LUCA.
HOGENOMiHOG000146053.
OMAiDEACQRY.
OrthoDBiEOG6G4VZH.

Miscellaneous databases

EvolutionaryTraceiQ5LST8.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR009534. DUF1153.
IPR010921. Trp_repressor/repl_initiator.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF06627. DUF1153. 1 hit.
[Graphical view]
SUPFAMiSSF48295. SSF48295. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700808 / DSM 15171 / DSS-3Imported.
  2. "Northeast Structural Genomics Consortium Target SiR5."
    Wang L., Rossi P., Chen C.X., Nwosu C., Cunningham K., Ma L.-C., Xiao R., Liu J., Baran M.C., Swapna G.V.T., Acton T.B., Burkhard R., Montelione G.T.
    Submitted (DEC-2006) to the PDB data bank
    Cited for: STRUCTURE BY NMR.
  3. "An updated genome annotation for the model marine bacterium Ruegeria pomeroyi DSS-3."
    Rivers A.R., Smith C.B., Moran M.A.
    Stand. Genomic Sci. 9:11-11(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: ATCC 700808 / DSM 15171 / DSS-3Imported.

Entry informationi

Entry nameiQ5LST8_RUEPO
AccessioniPrimary (citable) accession number: Q5LST8
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 2005
Last sequence update: February 1, 2005
Last modified: March 16, 2016
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.