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Protein
Submitted name:

ABC transporter, periplasmic substrate-binding protein

Gene

SPO2066

Organism
Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
ABC transporter, periplasmic substrate-binding proteinImported
Gene namesi
Ordered Locus Names:SPO2066Imported
OrganismiRuegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi)Imported
Taxonomic identifieri246200 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRuegeria
Proteomesi
  • UP000001023 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 27Sequence analysisAdd BLAST27
ChainiPRO_500425937028 – 604Sequence analysisAdd BLAST577

Interactioni

Protein-protein interaction databases

STRINGi246200.SPO2066.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3LVUX-ray1.79A/B/C/D314-568[»]
ProteinModelPortaliQ5LRQ9.
SMRiQ5LRQ9.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5LRQ9.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini104 – 512SBP_bac_5InterPro annotationAdd BLAST409

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4105E43. Bacteria.
COG4166. LUCA.
HOGENOMiHOG000260503.
KOiK02035.
OMAiARWNRIE.
OrthoDBiPOG091H07JN.

Family and domain databases

InterProiIPR030678. Peptide/Ni-bd.
IPR000914. SBP_5_dom.
[Graphical view]
PfamiPF00496. SBP_bac_5. 1 hit.
[Graphical view]
PIRSFiPIRSF002741. MppA. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5LRQ9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRPDYFRPFR PLTAGIALLL GASFADAESR HAIAMYGAPA LPPDFVSLPY
60 70 80 90 100
ANPDAPKGGR VVFGNTGGFD SLNPFAQKGT FPWQMPFWSY ESLMGRSWDE
110 120 130 140 150
PFTLYGLLAE SVEVPPDRAW VEFTLREEAR FSDGSPVTVE DVIWSYQTLG
160 170 180 190 200
TEGHLRYRGF WSRIASIEAT GPRSLRITFA DEDRELAMLA GLRPILQKAQ
210 220 230 240 250
WEGRSLSEGN IHDIPIGTGP YVVSAYEPGR YVTFARNPDY WGADLGFRRG
260 270 280 290 300
TMNFDEMRID FFGDGTVLME AFKAGELSAI REFNAQKWDS AYDFPAAQRG
310 320 330 340 350
DVIKTEIAHG KPSGMTGFVI NTRRAPFDDW RLREALLLAF NFEFINDTVT
360 370 380 390 400
GGVMPRITSY FSGTDLAYRP GTASGREAEL LAPFAADLPP GTLEGYALPQ
410 420 430 440 450
GDGTARNRTN LRRAAQFLEQ AGFRIEQGQL LGPDGAPLAL RFLLRQGDSD
460 470 480 490 500
MQTVLEIYTR ALERLGIAAQ IEKVDNAQYT ARVAELDFDL TPFRRDLSLS
510 520 530 540 550
PGNEQRLYWG SHSAGQPGTR NLMGAASPAI DAMIDRMLAA TTEDELTAAT
560 570 580 590 600
RALDRVLTAG RYVIPIWRFD VGRIAHIRQL RFPPNPPIYG DGPQYMPDVW

WYQD
Length:604
Mass (Da):67,356
Last modified:February 1, 2005 - v1
Checksum:i38C9B9B3AEADFFD5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000031 Genomic DNA. Translation: AAV95337.1.

Genome annotation databases

EnsemblBacteriaiAAV95337; AAV95337; SPO2066.
KEGGisil:SPO2066.
PATRICi23377473. VBIRuePom114501_2093.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000031 Genomic DNA. Translation: AAV95337.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3LVUX-ray1.79A/B/C/D314-568[»]
ProteinModelPortaliQ5LRQ9.
SMRiQ5LRQ9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi246200.SPO2066.

Protocols and materials databases

DNASUi3193685.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAV95337; AAV95337; SPO2066.
KEGGisil:SPO2066.
PATRICi23377473. VBIRuePom114501_2093.

Phylogenomic databases

eggNOGiENOG4105E43. Bacteria.
COG4166. LUCA.
HOGENOMiHOG000260503.
KOiK02035.
OMAiARWNRIE.
OrthoDBiPOG091H07JN.

Miscellaneous databases

EvolutionaryTraceiQ5LRQ9.

Family and domain databases

InterProiIPR030678. Peptide/Ni-bd.
IPR000914. SBP_5_dom.
[Graphical view]
PfamiPF00496. SBP_bac_5. 1 hit.
[Graphical view]
PIRSFiPIRSF002741. MppA. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ5LRQ9_RUEPO
AccessioniPrimary (citable) accession number: Q5LRQ9
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 2005
Last sequence update: February 1, 2005
Last modified: November 2, 2016
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.