Q5LR50 (RS6_SILPO) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
30S ribosomal protein S6

Gene names

Name:	rpsF
Ordered Locus Names:	SPO2281

Organism

Silicibacter pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) [Complete proteome] [HAMAP]

Taxonomic identifier

246200 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Ruegeria

Protein attributes

Sequence length	117 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Binds together with S18 to 16S ribosomal RNA By similarity. HAMAP MF_00360
Sequence similarities	Belongs to the ribosomal protein S6P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: UniProtKB-KW structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 117	117	30S ribosomal protein S6 HAMAP MF_00360		PRO_0000229579

Sequences

	Sequence		Length	Mass (Da)
	Q5LR50 [UniParc]. Last modified February 1, 2005. Version 1. Checksum: 055ED328BA8E9370	FASTA	117	13,580
	10 20 30 40 50 60 MPLYEHVMIA RQDLSNTQAE GLIEHFGAVL SDNGGSLVDH EYWGVKTMAY KINKNRKGHY 70 80 90 100 110 AFLRTDAPAS AVQEMERLMR LHDDVMRVLT IKVDEHAEGP SVQMQKRDER DSRRERR

References

[1]

"Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment." Moran M.A., Buchan A., Gonzalez J.M., Heidelberg J.F., Whitman W.B., Kiene R.P., Henriksen J.R., King G.M., Belas R., Fuqua C., Brinkac L.M., Lewis M., Johri S., Weaver B., Pai G., Eisen J.A., Rahe E., Sheldon W.M. , Ye W., Miller T.R., Carlton J., Rasko D.A., Paulsen I.T., Ren Q., Daugherty S.C., DeBoy R.T., Dodson R.J., Durkin A.S., Madupu R., Nelson W.C., Sullivan S.A., Rosovitz M.J., Haft D.H., Selengut J., Ward N. Nature 432:910-913(2004) [PubMed: 15602564] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700808 / DSM 15171 / DSS-3.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000031 Genomic DNA. Translation: AAV95545.1.
RefSeq	YP_167505.1. NC_003911.11.
3D structure databases
ProteinModelPortal	Q5LR50.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3194317.
GenomeReviews	Gene locus SPO2281 in contig CP000031_GR.
KEGG	sil:SPO2281.
NMPDR	fig|246200.3.peg.2594.
PATRIC	23377917. VBIRuePom114501_2310.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG747554.
OMA	ITEASPM.
ProtClustDB	PRK00453.
Enzyme and pathway databases
BioCyc	RPOM246200:SPO_2281-MONOMER.
Family and domain databases
HAMAP	MF_00360. Ribosomal_S6. [Tree]
InterPro	IPR000529. Ribosomal_S6. IPR020814. Ribosomal_S6_plastid/chlpt. IPR014717. Transl_elong_EF1B/ribosomal_S6. [Graphical view]
Gene3D	G3DSA:3.30.70.60. Transl_elong_EF1B/rib_con. 1 hit.
KO	K02990.
Pfam	PF01250. Ribosomal_S6. 1 hit. [Graphical view]
SUPFAM	SSF54995. Ribosomal_S6. 1 hit.
TIGRFAMs	TIGR00166. S6. 1 hit.
PROSITE	PS01048. RIBOSOMAL_S6. False negative. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RS6_SILPO

Accession

Primary (citable) accession number: Q5LR50

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 4, 2006
Last sequence update:	February 1, 2005
Last modified:	January 25, 2012
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program