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Protein
Submitted name:

DNA-binding response regulator, LuxR family

Gene

SPO2369

Organism
Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi170 – 189H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotationImported
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
DNA-binding response regulator, LuxR familyImported
Gene namesi
Ordered Locus Names:SPO2369Imported
OrganismiRuegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi)Imported
Taxonomic identifieri246200 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRuegeria
Proteomesi
  • UP000001023 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Interactioni

Protein-protein interaction databases

STRINGi246200.SPO2369.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2QSJX-ray2.10A/B2-144[»]
ProteinModelPortaliQ5LQW4.
SMRiQ5LQW4.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5LQW4.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 120Response regulatoryInterPro annotationAdd BLAST118
Domaini146 – 211HTH luxR-type DNA-bindingInterPro annotationAdd BLAST66

Phylogenomic databases

eggNOGiENOG4105N51. Bacteria.
COG2197. LUCA.
HOGENOMiHOG000034813.
OMAiIVADDYP.
OrthoDBiPOG091H05B9.

Family and domain databases

CDDicd06170. LuxR_C_like. 1 hit.
Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR011006. CheY-like_superfamily.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR001789. Sig_transdc_resp-reg_receiver.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00196. GerE. 1 hit.
PF00072. Response_reg. 1 hit.
PRINTSiPR00038. HTHLUXR.
SMARTiView protein in SMART
SM00421. HTH_LUXR. 1 hit.
SM00448. REC. 1 hit.
SUPFAMiSSF46894. SSF46894. 1 hit.
SSF52172. SSF52172. 1 hit.
PROSITEiView protein in PROSITE
PS50043. HTH_LUXR_2. 1 hit.
PS50110. RESPONSE_REGULATORY. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5LQW4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTVVLIVDDH HLIRAGAKNL LEGAFSGMRV EGAETVSDAL AFLEADNTVD
60 70 80 90 100
LILLDVNLPD AEAIDGLVRL KRFDPSNAVA LISGETDHEL IRAALEAGAD
110 120 130 140 150
GFIPKSADPQ VLIHAVSLIL EGEIFLPRSY LQGGRMAEVA TPLDSSERPE
160 170 180 190 200
QNLTPRQRDV FELMCKGLAN KEIARLLDLS ESTVKSHVSA IFKQIGTTSR
210 220
SKTIAIFRQE GVALPSASED
Length:220
Mass (Da):23,740
Last modified:February 1, 2005 - v1
Checksum:iC958C54CE64847E3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000031 Genomic DNA. Translation: AAV95629.1.
RefSeqiWP_011048085.1. NC_003911.12.

Genome annotation databases

EnsemblBacteriaiAAV95629; AAV95629; SPO2369.
KEGGisil:SPO2369.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000031 Genomic DNA. Translation: AAV95629.1.
RefSeqiWP_011048085.1. NC_003911.12.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2QSJX-ray2.10A/B2-144[»]
ProteinModelPortaliQ5LQW4.
SMRiQ5LQW4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi246200.SPO2369.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAV95629; AAV95629; SPO2369.
KEGGisil:SPO2369.

Phylogenomic databases

eggNOGiENOG4105N51. Bacteria.
COG2197. LUCA.
HOGENOMiHOG000034813.
OMAiIVADDYP.
OrthoDBiPOG091H05B9.

Miscellaneous databases

EvolutionaryTraceiQ5LQW4.

Family and domain databases

CDDicd06170. LuxR_C_like. 1 hit.
Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR011006. CheY-like_superfamily.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR001789. Sig_transdc_resp-reg_receiver.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00196. GerE. 1 hit.
PF00072. Response_reg. 1 hit.
PRINTSiPR00038. HTHLUXR.
SMARTiView protein in SMART
SM00421. HTH_LUXR. 1 hit.
SM00448. REC. 1 hit.
SUPFAMiSSF46894. SSF46894. 1 hit.
SSF52172. SSF52172. 1 hit.
PROSITEiView protein in PROSITE
PS50043. HTH_LUXR_2. 1 hit.
PS50110. RESPONSE_REGULATORY. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ5LQW4_RUEPO
AccessioniPrimary (citable) accession number: Q5LQW4
Entry historyiIntegrated into UniProtKB/TrEMBL: February 1, 2005
Last sequence update: February 1, 2005
Last modified: June 7, 2017
This is version 102 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.