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Protein
Submitted name:

DNA-binding response regulator, LuxR family

Gene

SPO2369

Organism
Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotationImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA-binding response regulator, LuxR familyImported
Gene namesi
Ordered Locus Names:SPO2369Imported
OrganismiRuegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi)Imported
Taxonomic identifieri246200 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRuegeria
Proteomesi
  • UP000001023 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi246200.SPO2369.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2QSJX-ray2.10A/B2-144[»]
ProteinModelPortaliQ5LQW4.
SMRiQ5LQW4. Positions 1-130.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5LQW4.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini3 – 120118Response regulatoryInterPro annotationAdd
BLAST
Domaini146 – 21166HTH luxR-type DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH luxR-type DNA-binding domain.UniRule annotation
Contains response regulatory domain.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105N51. Bacteria.
COG2197. LUCA.
HOGENOMiHOG000034813.
OMAiMEATEAH.
OrthoDBiEOG69GZGV.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR011006. CheY-like_superfamily.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR001789. Sig_transdc_resp-reg_receiver.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00196. GerE. 1 hit.
PF00072. Response_reg. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00421. HTH_LUXR. 1 hit.
SM00448. REC. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
SSF52172. SSF52172. 1 hit.
PROSITEiPS50043. HTH_LUXR_2. 1 hit.
PS50110. RESPONSE_REGULATORY. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5LQW4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTVVLIVDDH HLIRAGAKNL LEGAFSGMRV EGAETVSDAL AFLEADNTVD
60 70 80 90 100
LILLDVNLPD AEAIDGLVRL KRFDPSNAVA LISGETDHEL IRAALEAGAD
110 120 130 140 150
GFIPKSADPQ VLIHAVSLIL EGEIFLPRSY LQGGRMAEVA TPLDSSERPE
160 170 180 190 200
QNLTPRQRDV FELMCKGLAN KEIARLLDLS ESTVKSHVSA IFKQIGTTSR
210 220
SKTIAIFRQE GVALPSASED
Length:220
Mass (Da):23,740
Last modified:February 1, 2005 - v1
Checksum:iC958C54CE64847E3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000031 Genomic DNA. Translation: AAV95629.1.
RefSeqiWP_011048085.1. NC_003911.12.

Genome annotation databases

EnsemblBacteriaiAAV95629; AAV95629; SPO2369.
KEGGisil:SPO2369.
PATRICi23378111. VBIRuePom114501_2406.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000031 Genomic DNA. Translation: AAV95629.1.
RefSeqiWP_011048085.1. NC_003911.12.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2QSJX-ray2.10A/B2-144[»]
ProteinModelPortaliQ5LQW4.
SMRiQ5LQW4. Positions 1-130.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi246200.SPO2369.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAV95629; AAV95629; SPO2369.
KEGGisil:SPO2369.
PATRICi23378111. VBIRuePom114501_2406.

Phylogenomic databases

eggNOGiENOG4105N51. Bacteria.
COG2197. LUCA.
HOGENOMiHOG000034813.
OMAiMEATEAH.
OrthoDBiEOG69GZGV.

Miscellaneous databases

EvolutionaryTraceiQ5LQW4.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR011006. CheY-like_superfamily.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR001789. Sig_transdc_resp-reg_receiver.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00196. GerE. 1 hit.
PF00072. Response_reg. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00421. HTH_LUXR. 1 hit.
SM00448. REC. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
SSF52172. SSF52172. 1 hit.
PROSITEiPS50043. HTH_LUXR_2. 1 hit.
PS50110. RESPONSE_REGULATORY. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700808 / DSM 15171 / DSS-3Imported.
  2. "Crystal structure of a LuxR family DNA-binding response regulator from Silicibacter pomeroyi."
    Bonanno J.B., Freeman J., Bain K.T., Mendoza M., Romero R., Smith D., Wasserman S., Sauder J.M., Burley S.K., Almo S.C.
    Submitted (JUL-2007) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.10 ANGSTROMS) OF 2-144.
  3. "An updated genome annotation for the model marine bacterium Ruegeria pomeroyi DSS-3."
    Rivers A.R., Smith C.B., Moran M.A.
    Stand. Genomic Sci. 9:11-11(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: ATCC 700808 / DSM 15171 / DSS-3Imported.

Entry informationi

Entry nameiQ5LQW4_RUEPO
AccessioniPrimary (citable) accession number: Q5LQW4
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 2005
Last sequence update: February 1, 2005
Last modified: March 16, 2016
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.