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Protein
Submitted name:

Uncharacterized protein

Gene

SPO2555

Organism
Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Ordered Locus Names:SPO2555Imported
OrganismiRuegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi)Imported
Taxonomic identifieri246200 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRuegeria
Proteomesi
  • UP000001023 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi246200.SPO2555.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2IMHX-ray1.57A/B2-221[»]
ProteinModelPortaliQ5LQD5.
SMRiQ5LQD5. Positions 1-221.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5LQD5.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105HJ4. Bacteria.
COG3342. LUCA.
HOGENOMiHOG000035803.
OMAiSLCVGGW.
OrthoDBiEOG632D16.

Family and domain databases

Gene3Di3.60.20.10. 1 hit.
InterProiIPR010430. DUF1028.
IPR029055. Ntn_hydrolases_N.
[Graphical view]
PfamiPF06267. DUF1028. 1 hit.
[Graphical view]
SUPFAMiSSF56235. SSF56235. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5LQD5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTFSILAHDP ETGAIGGAAA TGSLCVGGWV LRGDLNAGMS ASQGAAPSTF
60 70 80 90 100
WGEEVLQHLR DGSHPEDAVN HVTSQDSGRA YRQLAAMDLL GNAAAFTGSE
110 120 130 140 150
NQDIKGSVTF ASGIASGNML GDNSVLGAMT EAFVASDLTF ERRLLAALIA
160 170 180 190 200
AEGAGSDFRG LLSAAMLVLH PDRPPVTLRI DYHPDNPIGA LEQLYQKATT
210 220
GDYADWARQV PVLSDKERIL D
Length:221
Mass (Da):23,169
Last modified:February 1, 2005 - v1
Checksum:i3E023DB05BF8C4E1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000031 Genomic DNA. Translation: AAV95805.1.
RefSeqiWP_011048262.1. NC_003911.12.

Genome annotation databases

EnsemblBacteriaiAAV95805; AAV95805; SPO2555.
KEGGisil:SPO2555.
PATRICi23378515. VBIRuePom114501_2607.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000031 Genomic DNA. Translation: AAV95805.1.
RefSeqiWP_011048262.1. NC_003911.12.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2IMHX-ray1.57A/B2-221[»]
ProteinModelPortaliQ5LQD5.
SMRiQ5LQD5. Positions 1-221.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi246200.SPO2555.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAV95805; AAV95805; SPO2555.
KEGGisil:SPO2555.
PATRICi23378515. VBIRuePom114501_2607.

Phylogenomic databases

eggNOGiENOG4105HJ4. Bacteria.
COG3342. LUCA.
HOGENOMiHOG000035803.
OMAiSLCVGGW.
OrthoDBiEOG632D16.

Miscellaneous databases

EvolutionaryTraceiQ5LQD5.

Family and domain databases

Gene3Di3.60.20.10. 1 hit.
InterProiIPR010430. DUF1028.
IPR029055. Ntn_hydrolases_N.
[Graphical view]
PfamiPF06267. DUF1028. 1 hit.
[Graphical view]
SUPFAMiSSF56235. SSF56235. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700808 / DSM 15171 / DSS-3Imported.
  2. "Crystal structure of hypothetical protein from Silicibacter pomeroyi."
    Bonanno J.B., Dickey M., Bain K.T., Slocombe A., Ozyurt S., Wasserman S., Burley S.K., Almo S.C.
    Submitted (OCT-2006) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.57 ANGSTROMS) OF 2-221.
  3. "An updated genome annotation for the model marine bacterium Ruegeria pomeroyi DSS-3."
    Rivers A.R., Smith C.B., Moran M.A.
    Stand. Genomic Sci. 9:11-11(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: ATCC 700808 / DSM 15171 / DSS-3Imported.

Entry informationi

Entry nameiQ5LQD5_RUEPO
AccessioniPrimary (citable) accession number: Q5LQD5
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 2005
Last sequence update: February 1, 2005
Last modified: March 16, 2016
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.