Q5LNI7 (Q5LNI7_SILPO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Peptide deformylase RuleBase RU003335

Gene names

Name:	def-1 EMBL AAV96452.1
Ordered Locus Names:	SPO3217

Organism

Silicibacter pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) [Complete proteome] [HAMAP]

Taxonomic identifier

246200 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Ruegeria

Protein attributes

Sequence length	165 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. SAAS SAAS000181
Sequence similarities	Belongs to the polypeptide deformylase family. RuleBase RU003335

Ontologies

Keywords
Biological process	Protein biosynthesis SAAS SAAS000181
Ligand	Metal-binding SAAS SAAS000181
Molecular function	Hydrolase SAAS SAAS000181 EMBL AAV96452.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	iron ion binding Inferred from electronic annotation. Source: InterPro peptide deformylase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5LNI7 [UniParc]. Last modified February 1, 2005. Version 1. Checksum: 64FF8A665B073A4F	FASTA	165	18,556
	10 20 30 40 50 60 MTVRRCLPWP DKHLRTRAAE VSEITDEIRA IWTDMIDTME AMPGVGLAAP QIGVMLRLAV 70 80 90 100 110 120 VDGSSERGRA VRLANPEILH ASIELREHDE ASPNLPGVSA KLKRPRAVTV RFLNEQGQVD 130 140 150 160 RRDFVGIEAT SVQHQIDHLN GRMYFDNLSK VKRDMLLRKA RKLGG

References

[1]

"Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment." Moran M.A., Buchan A., Gonzalez J.M., Heidelberg J.F., Whitman W.B., Kiene R.P., Henriksen J.R., King G.M., Belas R., Fuqua C., Brinkac L.M., Lewis M., Johri S., Weaver B., Pai G., Eisen J.A., Rahe E., Sheldon W.M. , Ye W., Miller T.R., Carlton J., Rasko D.A., Paulsen I.T., Ren Q., Daugherty S.C., DeBoy R.T., Dodson R.J., Durkin A.S., Madupu R., Nelson W.C., Sullivan S.A., Rosovitz M.J., Haft D.H., Selengut J., Ward N. Nature 432:910-913(2004) [PubMed: 15602564] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700808 / DSM 15171 / DSS-3.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000031 Genomic DNA. Translation: AAV96452.1.
RefSeq	YP_168420.1. NC_003911.11.
3D structure databases
ProteinModelPortal	Q5LNI7.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3194969.
GenomeReviews	Gene locus SPO3217 in contig CP000031_GR.
KEGG	sil:SPO3217.
NMPDR	fig|246200.3.peg.3590.
PATRIC	23379881. VBIRuePom114501_3284.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG665227.
OMA	QHQIDHL.
ProtClustDB	CLSK934097.
Enzyme and pathway databases
BioCyc	RPOM246200:SPO_3217-MONOMER.
Family and domain databases
HAMAP	MF_00163. Pep_deformylase. [Tree]
InterPro	IPR000181. Fmet_deformylase. IPR023635. Peptide_deformylase. [Graphical view]
Gene3D	G3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KO	K01462.
PANTHER	PTHR10458. Fmet_deformylase. 1 hit.
Pfam	PF01327. Pep_deformylase. 1 hit. [Graphical view]
PIRSF	PIRSF004749. Pep_def. 1 hit.
PRINTS	PR01576. PDEFORMYLASE.
SUPFAM	SSF56420. Fmet_deformylase. 1 hit.
TIGRFAMs	TIGR00079. Pept_deformyl. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q5LNI7_SILPO

Accession

Primary (citable) accession number: Q5LNI7

Entry history

Integrated into UniProtKB/TrEMBL:	February 1, 2005
Last sequence update:	February 1, 2005
Last modified:	December 14, 2011
This is version 44 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)