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Protein
Submitted name:

Transcriptional regulator, MarR family

Gene

SPO3579

Organism
Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingSAAS annotation
Biological processTranscription, Transcription regulationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator, MarR familyImported
Gene namesi
Ordered Locus Names:SPO3579Imported
OrganismiRuegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi)Imported
Taxonomic identifieri246200 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRuegeria
Proteomesi
  • UP000001023 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi246200.SPO3579.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3BJ6X-ray2.01A/B1-149[»]
ProteinModelPortaliQ5LMI4.
SMRiQ5LMI4.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5LMI4.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 140HTH marR-typeInterPro annotationAdd BLAST136

Phylogenomic databases

eggNOGiENOG4105I3F. Bacteria.
ENOG4111T9D. LUCA.
OMAiGPMTVPQ.
OrthoDBiPOG091H06HC.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR000835. HTH_MarR-typ.
IPR011991. WHTH_DNA-bd_dom.
SMARTiView protein in SMART
SM00347. HTH_MARR. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS50995. HTH_MARR_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5LMI4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTHETDQLYQ AVQATRPLLR NITAAVERGT LREGVTVGQR AILEGLSLTP
60 70 80 90 100
GATAPQLGAA LQMKRQYISR ILQEVQRAGL IERRTNPEHA RSHRYWLTPR
110 120 130 140
GEAIITAIRA DEMAKLALFS EGFSSVELTA YHKVQLALTR FFADLAKEA
Length:149
Mass (Da):16,612
Last modified:February 1, 2005 - v1
Checksum:iED6450FACCB94FB0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000031 Genomic DNA. Translation: AAV96804.1.
RefSeqiWP_011049259.1. NC_003911.12.

Genome annotation databases

EnsemblBacteriaiAAV96804; AAV96804; SPO3579.
KEGGisil:SPO3579.

Similar proteinsi

Entry informationi

Entry nameiQ5LMI4_RUEPO
AccessioniPrimary (citable) accession number: Q5LMI4
Entry historyiIntegrated into UniProtKB/TrEMBL: February 1, 2005
Last sequence update: February 1, 2005
Last modified: September 27, 2017
This is version 85 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported