Q5LJ68 (Q5LJ68_BACFN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative beta-galactosidase EMBL CAH05808.1
EC=3.2.1.23 EMBL CAH05808.1

Gene names

Ordered Locus Names:	BF0029
ORF Names:	BF9343_0029 EMBL CAH05808.1

Organism

Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) [Complete proteome] [HAMAP] EMBL CAH05808.1

Taxonomic identifier

272559 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Bacteroidia › Bacteroidales › Bacteroidaceae › Bacteroides › Bacteroides fragilis

Protein attributes

Sequence length	704 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Molecular function	Glycosidase SAAS SAAS006101 EMBL CAH05808.1 Hydrolase
Technical term	3D-structure PDB 3FN9 Complete proteome
Gene Ontology (GO)
Biological_process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	beta-galactosidase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5LJ68 [UniParc]. Last modified June 21, 2005. Version 1. Checksum: 69E1767255F563C0	FASTA	704	80,501
	10 20 30 40 50 60 MRKLSYLIIV CLCLCSGVIP LMARQVTAFN TGWQFKKGPF ATDPMRAASQ WDGKWETVEI 70 80 90 100 110 120 PHTWNAMDMQ VQSGSFYEGA GYYRKTQFFP HDLEGKRVFL RFEGVGACAE VYVNGKLAGT 130 140 150 160 170 180 HKGGYSAFAC EIGTALKLGA ENEIIVKADN KARPDVIPVN QNLFGVYGGI YRPVWLIVTE 190 200 210 220 230 240 QNNITVTDCA SPGVYITQKD VSKKSADITV KVKLDNAGLQ PAAVTLENTI YTQEGQKVGT 250 260 270 280 290 300 HSRSFDLSPQ GTQTYLSTFK LKNPHLWQGR KDPYLYKVVC RLMADGKVID EVVQPLGVRK 310 320 330 340 350 360 YEIVAGKGFF LNGEKYSMYG VTRHQDWWGL GSALKNEHHD FDLAAIMDVG ATTVRFAHYQ 370 380 390 400 410 420 QSDYLYSRCD TLGLIIWAEI PCVNRVTGYE TENAQSQLRE LIRQSFNHPS IYVWGLHNEV 430 440 450 460 470 480 YQPHEYTAAL TRSLHDLAKT EDPDRYTVSV NGYGHMDHPV NLNADIQGMN RYFGWYEKKI 490 500 510 520 530 540 QDIKPWVEQL EKDYPYQKLM LTEYGADANL AHQTEYLGDA LNWGKPFYPE TFQTKTHEYQ 550 560 570 580 590 600 WSIIKDHPYI IASYLWNMFD FAVPMWTRGG VPARNMKGLI TFDRKTKKDS YFWYKANWSE 610 620 630 640 650 660 EPVLYLTQRR NADREKRTTA VTVYSNIGTP KVYLNGQELS GIRNGYTDVH YVFDNVSLAD 670 680 690 700 GKNILKAVVS TKGKEYTDEI EWNYSGEKNR EIDSYENKNE HSGF

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Extensive DNA inversions in the B. fragilis genome control variable gene expression." Cerdeno-Tarraga A.-M., Patrick S., Crossman L.C., Blakely G., Abratt V., Lennard N., Poxton I., Duerden B., Harris B., Quail M.A., Barron A., Clark L., Corton C., Doggett J., Holden M.T.G., Larke N., Line A., Lord A. , Norbertczak H., Ormond D., Price C., Rabbinowitsch E., Woodward J., Barrell B.G., Parkhill J. Science 307:1463-1465(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 25285 / NCTC 9343.
[2]	"Structure of putative beta-galactosidase from bacteroides fragilis." Ramagopal U.A., Toro R., Burley S.K., Almo S.C. Submitted (DEC-2008) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.70 ANGSTROMS) OF 23-703.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CR626927 Genomic DNA. Translation: CAH05808.1.

RefSeq

YP_209770.1. NC_003228.3.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3FN9	X-ray	2.70	A/B/C/D	23-703	[»]

ProteinModelPortal

Q5LJ68.

ModBase

Search...

Protein-protein interaction databases

STRING

272559.BF0029.

Protein family/group databases

CAZy

GH2. Glycoside Hydrolase Family 2.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

CAH05808; CAH05808; BF9343_0029.

GeneID

3288178.

KEGG

bfs:BF0029.

PATRIC

21036526. VBIBacFra29119_0030.

Organism-specific databases

CMR

Search...

Phylogenomic databases

eggNOG

COG3250.

HOGENOM

HOG000269381.

KO

K01190.

OMA

MTKDLNL.

ProtClustDB

CLSK823348.

Family and domain databases

Gene3D

2.60.40.320. 1 hit.
3.20.20.80. 1 hit.

InterPro

IPR008979. Galactose-bd-like.
IPR006101. Glyco_hydro_2.
IPR013812. Glyco_hydro_2/20_Ig-like.
IPR006102. Glyco_hydro_2_Ig-like.
IPR006104. Glyco_hydro_2_N.
IPR006103. Glyco_hydro_2_TIM.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]

Pfam

PF00703. Glyco_hydro_2. 1 hit.
PF02836. Glyco_hydro_2_C. 1 hit.
PF02837. Glyco_hydro_2_N. 1 hit.
[Graphical view]

PRINTS

PR00132. GLHYDRLASE2.

SUPFAM

SSF49785. Gal_bind_like. 1 hit.
SSF49303. Glyco_hydro_2Ig. 1 hit.
SSF51445. Glyco_hydro_cat. 1 hit.

ProtoNet

Search...

Other

EvolutionaryTrace

Q5LJ68.

Entry information

Entry name

Q5LJ68_BACFN

Accession

Primary (citable) accession number: Q5LJ68

Entry history

Integrated into UniProtKB/TrEMBL:	June 21, 2005
Last sequence update:	June 21, 2005
Last modified:	May 1, 2013
This is version 53 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)