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Q5LJ68 (Q5LJ68_BACFN) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 58. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length704 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   Molecular functionGlycosidase SAAS SAAS006101 EMBL CAH05808.1
Hydrolase
   Technical term3D-structure PDB 3FN9
Complete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functionbeta-galactosidase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q5LJ68 [UniParc].

Last modified June 21, 2005. Version 1.
Checksum: 69E1767255F563C0

FASTA70480,501
        10         20         30         40         50         60 
MRKLSYLIIV CLCLCSGVIP LMARQVTAFN TGWQFKKGPF ATDPMRAASQ WDGKWETVEI 

        70         80         90        100        110        120 
PHTWNAMDMQ VQSGSFYEGA GYYRKTQFFP HDLEGKRVFL RFEGVGACAE VYVNGKLAGT 

       130        140        150        160        170        180 
HKGGYSAFAC EIGTALKLGA ENEIIVKADN KARPDVIPVN QNLFGVYGGI YRPVWLIVTE 

       190        200        210        220        230        240 
QNNITVTDCA SPGVYITQKD VSKKSADITV KVKLDNAGLQ PAAVTLENTI YTQEGQKVGT 

       250        260        270        280        290        300 
HSRSFDLSPQ GTQTYLSTFK LKNPHLWQGR KDPYLYKVVC RLMADGKVID EVVQPLGVRK 

       310        320        330        340        350        360 
YEIVAGKGFF LNGEKYSMYG VTRHQDWWGL GSALKNEHHD FDLAAIMDVG ATTVRFAHYQ 

       370        380        390        400        410        420 
QSDYLYSRCD TLGLIIWAEI PCVNRVTGYE TENAQSQLRE LIRQSFNHPS IYVWGLHNEV 

       430        440        450        460        470        480 
YQPHEYTAAL TRSLHDLAKT EDPDRYTVSV NGYGHMDHPV NLNADIQGMN RYFGWYEKKI 

       490        500        510        520        530        540 
QDIKPWVEQL EKDYPYQKLM LTEYGADANL AHQTEYLGDA LNWGKPFYPE TFQTKTHEYQ 

       550        560        570        580        590        600 
WSIIKDHPYI IASYLWNMFD FAVPMWTRGG VPARNMKGLI TFDRKTKKDS YFWYKANWSE 

       610        620        630        640        650        660 
EPVLYLTQRR NADREKRTTA VTVYSNIGTP KVYLNGQELS GIRNGYTDVH YVFDNVSLAD 

       670        680        690        700 
GKNILKAVVS TKGKEYTDEI EWNYSGEKNR EIDSYENKNE HSGF 

« Hide

References

« Hide 'large scale' references
[1]"Extensive DNA inversions in the B. fragilis genome control variable gene expression."
Cerdeno-Tarraga A.-M., Patrick S., Crossman L.C., Blakely G., Abratt V., Lennard N., Poxton I., Duerden B., Harris B., Quail M.A., Barron A., Clark L., Corton C., Doggett J., Holden M.T.G., Larke N., Line A., Lord A. expand/collapse author list , Norbertczak H., Ormond D., Price C., Rabbinowitsch E., Woodward J., Barrell B.G., Parkhill J.
Science 307:1463-1465(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 25285 / NCTC 9343.
[2]"Structure of putative beta-galactosidase from bacteroides fragilis."
Ramagopal U.A., Toro R., Burley S.K., Almo S.C.
Submitted (DEC-2008) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.70 ANGSTROMS) OF 23-703.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CR626927 Genomic DNA. Translation: CAH05808.1.
RefSeqYP_209770.1. NC_003228.3.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3FN9X-ray2.70A/B/C/D23-703[»]
ProteinModelPortalQ5LJ68.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING272559.BF0029.

Protein family/group databases

CAZyGH2. Glycoside Hydrolase Family 2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAH05808; CAH05808; BF9343_0029.
GeneID3288178.
KEGGbfs:BF0029.
PATRIC21036526. VBIBacFra29119_0030.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3250.
HOGENOMHOG000269381.
KOK01190.
OMAFLRVAHY.
OrthoDBEOG6DRPFW.

Enzyme and pathway databases

BioCycBFRA272559:GKF0-29-MONOMER.

Family and domain databases

Gene3D2.60.120.260. 1 hit.
2.60.40.320. 1 hit.
3.20.20.80. 1 hit.
InterProIPR008979. Galactose-bd-like.
IPR006101. Glyco_hydro_2.
IPR013812. Glyco_hydro_2/20_Ig-like.
IPR006102. Glyco_hydro_2_Ig-like.
IPR006104. Glyco_hydro_2_N.
IPR006103. Glyco_hydro_2_TIM.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamPF00703. Glyco_hydro_2. 1 hit.
PF02836. Glyco_hydro_2_C. 1 hit.
PF02837. Glyco_hydro_2_N. 1 hit.
[Graphical view]
PRINTSPR00132. GLHYDRLASE2.
SUPFAMSSF49303. SSF49303. 1 hit.
SSF49785. SSF49785. 1 hit.
SSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceQ5LJ68.

Entry information

Entry nameQ5LJ68_BACFN
AccessionPrimary (citable) accession number: Q5LJ68
Entry history
Integrated into UniProtKB/TrEMBL: June 21, 2005
Last sequence update: June 21, 2005
Last modified: May 14, 2014
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)