Q5LIZ0 (Q5LIZ0_BACFN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative deoxyribose-phosphate aldolase EMBL CAH05886.1
EC=4.1.2.4 EMBL CAH05886.1

Gene names

Ordered Locus Names:	BF0108
ORF Names:	BF9343_0107 EMBL CAH05886.1

Organism

Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) [Complete proteome] [HAMAP] EMBL CAH05886.1

Taxonomic identifier

272559 [NCBI]

Taxonomic lineage

Bacteria › Bacteroidetes › Bacteroidia › Bacteroidales › Bacteroidaceae › Bacteroides

Protein attributes

Sequence length	298 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate By similarity. SAAS SAAS011343
Catalytic activity	2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. SAAS SAAS011343
Pathway	Carbohydrate degradation; 2-deoxy-D-ribose 1-phosphate degradation; D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-alpha-D-ribose 1-phosphate: step 2/2. SAAS SAAS011343

Ontologies

Keywords
Ligand	Schiff base SAAS SAAS011343
Molecular function	Lyase SAAS SAAS011343 EMBL CAH05886.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	deoxyribonucleotide catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	deoxyribose-phosphate aldolase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5LIZ0 [UniParc]. Last modified June 21, 2005. Version 1. Checksum: 6F3C457EE1DA289B	FASTA	298	32,956
	10 20 30 40 50 60 MNDTPQDKYL TALAKYDTQL NDADVQVQVA ALIEKKVPEN NTEEVKKFLF NCIDLTTLNT 70 80 90 100 110 120 TDSDESVMRF TEKVNRFDDE FPDLKNVAAI CVYPNFAQVV KDTLEVEGIN IACVSGGFPS 130 140 150 160 170 180 SQTFTEVKIA ETAMALADGA DEIDIVIPVG AFLSGDYETM CEEIMELKET CKEHHLKVIL 190 200 210 220 230 240 ETGALKTASN IKKASILSMY SGADFIKTST GKQQPAATPE AAYVMCQAIK EYYEQTGNKV 250 260 270 280 290 GFKPAGGINT VNDALIYYTI VKEVLGKEWL SNELFRLGTS RLANLLLSEI KGEELKFF

References

[1]

"Extensive DNA inversions in the B. fragilis genome control variable gene expression." Cerdeno-Tarraga A.-M., Patrick S., Crossman L.C., Blakely G., Abratt V., Lennard N., Poxton I., Duerden B., Harris B., Quail M.A., Barron A., Clark L., Corton C., Doggett J., Holden M.T.G., Larke N., Line A., Lord A. , Norbertczak H., Ormond D., Price C., Rabbinowitsch E., Woodward J., Barrell B.G., Parkhill J. Science 307:1463-1465(2005) [PubMed: 15746427] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CR626927 Genomic DNA. Translation: CAH05886.1.
RefSeq	YP_209848.1. NC_003228.3.
3D structure databases
ProteinModelPortal	Q5LIZ0.
ModBase	Search...
Protein-protein interaction databases
STRING	Q5LIZ0.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3288228.
GenomeReviews	Gene locus BF0108 in contig CR626927_GR.
KEGG	bfs:BF0108.
PATRIC	21036676. VBIBacFra29119_0104.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0274.
HOGENOM	HBG636421.
OMA	FELVKQC.
ProtClustDB	CLSK823470.
Family and domain databases
InterPro	IPR013785. Aldolase_TIM. IPR011343. DeoC. IPR002915. DeoC/AroFGH_arch. [Graphical view]
Gene3D	G3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KO	K01619.
PANTHER	PTHR10889. DeoC. 1 hit.
Pfam	PF01791. DeoC. 1 hit. [Graphical view]
PIRSF	PIRSF001357. DeoC. 1 hit.
TIGRFAMs	TIGR00126. DeoC. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q5LIZ0_BACFN

Accession

Primary (citable) accession number: Q5LIZ0

Entry history

Integrated into UniProtKB/TrEMBL:	June 21, 2005
Last sequence update:	June 21, 2005
Last modified:	December 14, 2011
This is version 49 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)