Q5LIF9 (Q5LIF9_BACFN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative exported endo-arabinase EMBL CAH06067.1

Gene names

Ordered Locus Names:	BF0292
ORF Names:	BF9343_0288 EMBL CAH06067.1

Organism

Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) [Complete proteome] [HAMAP] EMBL CAH06067.1

Taxonomic identifier

272559 [NCBI]

Taxonomic lineage

Bacteria › Bacteroidetes › Bacteroidia › Bacteroidales › Bacteroidaceae › Bacteroides

Protein attributes

Sequence length	325 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	arabinan endo-1,5-alpha-L-arabinosidase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5LIF9 [UniParc]. Last modified June 21, 2005. Version 1. Checksum: 595D92DEB8CAA1CF	FASTA	325	36,646
	10 20 30 40 50 60 MKFFLFSLFT VFSFCVPSIA QQYSNPVINY SLPDPTVIKA DDGYYYLYAT ENIRNLPIHR 70 80 90 100 110 120 SKDMVNWSFV GTAFTNETRP TFEPKGNLWA PDINKIGDRY VMYYSMSVWG GEWTCGIGVA 130 140 150 160 170 180 TADKPEGPFT DHGKLFRSNE IGIQNCIDPF YIEDGGKKYL FWGSFHGIYG AELSDDGLSL 190 200 210 220 230 240 KEGMKPQQVA GTAYEGTYIH KRGGYYYLFA SIGRCCEGLK STYTTVVGRS KYLFGPYVDK 250 260 270 280 290 300 KGESMLENHH EVLIDKNEAF VGPGHNSEIV TDDKGADWVF YHAVSVANPE GRVLMLDRVN 310 320 WKKGWPVVEG DTPSLQAKAP VIRHK

References

[1]

"Extensive DNA inversions in the B. fragilis genome control variable gene expression." Cerdeno-Tarraga A.-M., Patrick S., Crossman L.C., Blakely G., Abratt V., Lennard N., Poxton I., Duerden B., Harris B., Quail M.A., Barron A., Clark L., Corton C., Doggett J., Holden M.T.G., Larke N., Line A., Lord A. , Norbertczak H., Ormond D., Price C., Rabbinowitsch E., Woodward J., Barrell B.G., Parkhill J. Science 307:1463-1465(2005) [PubMed: 15746427] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CR626927 Genomic DNA. Translation: CAH06067.1.
RefSeq	YP_210029.1. NC_003228.3.
3D structure databases
ProteinModelPortal	Q5LIF9.
ModBase	Search...
Protein-protein interaction databases
STRING	Q5LIF9.
Protein family/group databases
CAZy	GH43. Glycoside Hydrolase Family 43.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3285992.
GenomeReviews	Gene locus BF0292 in contig CR626927_GR.
KEGG	bfs:BF0292.
PATRIC	21037038. VBIBacFra29119_0284.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3507.
HOGENOM	HBG346382.
OMA	GHNSEIV.
ProtClustDB	CLSK823334.
Family and domain databases
InterPro	IPR006710. Glyco_hydro_43. IPR023296. Glyco_hydro_43_beta-prop. IPR016840. Glyco_hydro_43_endo_a_Ara-ase. [Graphical view]
Gene3D	G3DSA:2.115.10.20. Glyco_hydro_43_beta-prop. 1 hit.
PANTHER	PTHR22925. Glyco_hydro_43. 1 hit.
Pfam	PF04616. Glyco_hydro_43. 1 hit. [Graphical view]
PIRSF	PIRSF026534. Endo_alpha-L-arabinosidase. 1 hit.
SUPFAM	SSF75005. Glyco_hydro_43_beta-prop. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q5LIF9_BACFN

Accession

Primary (citable) accession number: Q5LIF9

Entry history

Integrated into UniProtKB/TrEMBL:	June 21, 2005
Last sequence update:	June 21, 2005
Last modified:	December 14, 2011
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)