Unreviewed, UniProtKB/TrEMBL Q5LIF1 (Q5LIF1_BACFN)

Names and origin

Protein names

Submitted name:
    Putative exported carbohydrate-binding protein EMBL CAH06075.1

Gene names

Ordered Locus Names:

BF0302

Organism

Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) [Complete proteome] [HAMAP]

Taxonomic identifier

272559 [NCBI]

Taxonomic lineage

Bacteria › Bacteroidetes › Bacteroidia › Bacteroidales › Bacteroidaceae › Bacteroides

Protein attributes

Sequence length	997 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Predicted.

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro cell adhesion Inferred from electronic annotation. Source: InterPro
Molecular function	carbohydrate binding Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5LIF1-1 [UniParc]. Last modified June 21, 2005. Version 1. Checksum: 9AAD847652B28ACE	FASTA	997	111,164
	10 20 30 40 50 60 MFINSLRKSP FSCSPGLILL GAFTLLSVPV YGQQIQQAER QVQQVPFLQF NFDEQGGETA 70 80 90 100 110 120 RNSGRGGSKY DARINGGTVE WGPGLQQGAA RLSNKGHFKL PDGVLAHVKD FTLSVWVYLN 130 140 150 160 170 180 EQSDNQTVCT FACGTDRYLI LTTQRGNEEN GVSLVMTKTQ ESGNHTDKEE RIAYTRQKGK 190 200 210 220 230 240 LSANAWHHLA FTLKGSVGTL YVDGVKAEIK TDFTVNPSLL GNTTDNYIGR PTWPDPYLNG 250 260 270 280 290 300 GIDDFRLYDY ALTDRQVYEL ASVADGRLVQ EDRDGLSLGD LSAVTTDLVL PSSGKSGTTI 310 320 330 340 350 360 SWSSAQGQYI SDSGKLYRPD AGTGNKKATL TATVRKGDVA LTKDFVLTVK DIGTEPEDVN 370 380 390 400 410 420 VFSMQTGNPT VPAYLADASF YYDDRTKTFY AFGTNDGAGG ENVYPAQMWY SKDCKEWKNE 430 440 450 460 470 480 VIAFPKSWTD YAGTLCVWAP SIEYNPDTKK YYLMYSIASN TFVGMADDLL GPWEDANGAA 490 500 510 520 530 540 PGKMLFKGYD GQFFMDDDRT MYIVTDSWHF KIMKLKFDEA GKIYIDNSDP VFAKSDSNPF 550 560 570 580 590 600 IGTYHYTQIE EIKNAFEASF IFKRNNLYYL MWSFNGSENY NVRYAVADKI TGPYREINRS 610 620 630 640 650 660 MTVPVLQRDD ANRILGPGHH SMFCYGGRTF IAYHRQHYPF VDSKRQTCID EVFFNEDGSI 670 680 690 700 710 720 RPITPTHKGV TVAPDVPGDH RTNLALGKQT LTSSARVYDD SEFAPRYRTH GISFCYAGNF 730 740 750 760 770 780 AVDENYGTHW DPGVGAHKPW LIVDLGSECK VDEIETIFEF TSRTYKYKLE YLSQKEAGSL 790 800 810 820 830 840 DAASGSHLWK VFADRSTDGV GQSPVTDTKP GNSPVKARFI RLTILEGVDI PLRADGLDKK 850 860 870 880 890 900 NAENALSIFE LKVFGEDRSD DLNRIFKAES FHNLYGIALE KNAAENGFIM GQIDNNDYLL 910 920 930 940 950 960 YRNVDLGKGA GTFTAKVASG TEGGKIEVYL GSLKGKPIGV LEVGNTGGDQ SWEIKSTSLE 970 980 990 RIARGRQEKL YLLFKGKTGT ENLLKLDWFQ FTKDRMK

References

[1]

"Extensive DNA inversions in the B. fragilis genome control variable gene expression." Cerdeno-Tarraga A.-M., Patrick S., Crossman L.C., Blakely G., Abratt V., Lennard N., Poxton I., Duerden B., Harris B., Quail M.A., Barron A., Clark L., Corton C., Doggett J., Holden M.T.G., Larke N., Line A., Lord A. , Norbertczak H., Ormond D., Price C., Rabbinowitsch E., Woodward J., Barrell B.G., Parkhill J. Science 307:1463-1465(2005) [PubMed: 15746427] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	CR626927 Genomic DNA. Translation: CAH06075.1.
RefSeq	YP_210037.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	Q5LIF1.
Protein family/group databases
CAZy	CBM32. Carbohydrate-Binding Module Family 32. CBM6. Carbohydrate-Binding Module Family 6. GH43. Glycoside Hydrolase Family 43.
Genome annotation databases
GeneID	3288420.
GenomeReviews	Gene locus BF0302 in contig CR626927_GR.
KEGG	bfs:BF0302.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	Q5LIF1.
OMA	WEDANGA.
Enzyme and pathway databases
BioCyc	BFRA272559:BF0302-MON.
Family and domain databases
InterPro	IPR005084. Carb-bd_dom_fam6. IPR006584. Cellulose_bd_IV. IPR000421. Coagulation_factor_5/8-type_C. IPR008985. ConA-like_lec_gl. IPR008979. Galactose-bd-like. IPR006710. Glyco_hydro_43. [Graphical view]
PANTHER	PTHR22925. Glyco_hydro_43. 1 hit.
Pfam	PF03422. CBM_6. 1 hit. PF00754. F5_F8_type_C. 1 hit. PF04616. Glyco_hydro_43. 1 hit. [Graphical view]
SMART	SM00606. CBD_IV. 1 hit. [Graphical view]
PROSITE	PS51175. CBM6. 1 hit. PS50022. FA58C_3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q5LIF1_BACFN

Accession

Primary (citable) accession number: Q5LIF1

Entry history

Integrated into UniProtKB/TrEMBL:	June 21, 2005
Last sequence update:	June 21, 2005
Last modified:	November 3, 2009
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)