Q5LIC7 (Q5LIC7_BACFN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative beta-galactosidase EMBL CAH06099.1

Gene names

Ordered Locus Names:	BF0328
ORF Names:	BF9343_0320 EMBL CAH06099.1

Organism

Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) [Complete proteome] [HAMAP] EMBL CAH06099.1

Taxonomic identifier

272559 [NCBI]

Taxonomic lineage

Bacteria › Bacteroidetes › Bacteroidia › Bacteroidales › Bacteroidaceae › Bacteroides

Protein attributes

Sequence length	695 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Molecular function	Glycosidase SAAS SAAS006101 Hydrolase
Technical term	3D-structure PDB 3CMG Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	cation binding Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5LIC7 [UniParc]. Last modified June 21, 2005. Version 1. Checksum: D28671C96BC9EF3C	FASTA	695	79,909
	10 20 30 40 50 60 MKQQKCNYFP SLWWRGREKG LSTFLFLLLF SISLHAQRQD ILLNNNWNFR FSHQVQGDTR 70 80 90 100 110 120 RVDLPHTWNA QDALAGKIDY KRGIGNYEKA LYIRPEWKGK RLFLRFDGVN SIADVFINRK 130 140 150 160 170 180 HIGEHRGGYG AFIFEITDLV KYGEKNSVLV RANNGEQLDI MPLVGDFNFY GGIYRDVHLL 190 200 210 220 230 240 ITDETCISPL DYASPGVYLV QEVVSPQEAK VCAKVNLSNR AADGTAELQV LVTDGTKVIC 250 260 270 280 290 300 KESRNVSLKQ GADILEQLPL LIQKPRLWNG CEDPFMYQVS ISLHKDGKQI DSVTQPLGLR 310 320 330 340 350 360 YYHTDPDKGF FLNGKHLPLH GVCRHQDRAE VGNALRPQHH EEDVALMREM GVNAIRLAHY 370 380 390 400 410 420 PQATYMYDLM DKHGIVTWAE IPFVGPGGYA DKGFVDQASF RENGKQQLIE LIRQHYNHPS 430 440 450 460 470 480 ICFWGLFNEL KEVGDNPVEY VKELNALAKQ EDPTRPTTSA SNQDGNLNFI TENIAWNRYD 490 500 510 520 530 540 GWYGSTPKTL ATFLDRTHKK HPELRIGISE YGAGASIYHQ QDSLKQPSAS GWWHPENWQT 550 560 570 580 590 600 YYHMENWKII AERPFVWGTF VWNMFDFGAA HRTEGDRPGI NDKGLVTFDR KVRKDAFYFY 610 620 630 640 650 660 KANWNKQEPM IYLAEKRCRL RYQPEQTFMA FTTAPEAELF VNGVSCGKQK ADTYSTVVWK 670 680 690 NVKLTSGENI IRVTTPGKKP LTDEVTVEYK EDRPL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Extensive DNA inversions in the B. fragilis genome control variable gene expression." Cerdeno-Tarraga A.-M., Patrick S., Crossman L.C., Blakely G., Abratt V., Lennard N., Poxton I., Duerden B., Harris B., Quail M.A., Barron A., Clark L., Corton C., Doggett J., Holden M.T.G., Larke N., Line A., Lord A. , Norbertczak H., Ormond D., Price C., Rabbinowitsch E., Woodward J., Barrell B.G., Parkhill J. Science 307:1463-1465(2005) [PubMed: 15746427] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]	"Crystal structure of putative beta-galactosidase from Bacteroides fragilis." Ramagopal U.A., Rutter M., Toro R., Hu S., Maletic M., Gheyi T., Sauder J.M., Burley S.K., Almo S.C. Submitted (MAR-2008) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS) OF 38-693.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CR626927 Genomic DNA. Translation: CAH06099.1.

RefSeq

YP_210061.1. NC_003228.3.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3CMG	X-ray	1.90	A	38-693	[»]

ProteinModelPortal

Q5LIC7.

SMR

Q5LIC7. Positions 38-693.

ModBase

Search...

Protein-protein interaction databases

STRING

Q5LIC7.

Protein family/group databases

CAZy

GH2. Glycoside Hydrolase Family 2.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

3286062.

GenomeReviews

Gene locus BF0328 in contig CR626927_GR.

KEGG

bfs:BF0328.

PATRIC

21037110. VBIBacFra29119_0320.

Organism-specific databases

CMR

Search...

Phylogenomic databases

eggNOG

COG3250.

HOGENOM

HBG537368.

OMA

IADVFIN.

ProtClustDB

CLSK822364.

Family and domain databases

InterPro

IPR008979. Galactose-bd-like.
IPR006101. Glyco_hydro_2.
IPR013812. Glyco_hydro_2/20_Ig-like.
IPR006102. Glyco_hydro_2_Ig-like.
IPR006104. Glyco_hydro_2_N.
IPR006103. Glyco_hydro_2_TIM.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]

Gene3D

G3DSA:2.60.40.320. Glyco_hydro_2/20_Ig-like. 1 hit.
G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.

Pfam

PF00703. Glyco_hydro_2. 1 hit.
PF02836. Glyco_hydro_2_C. 1 hit.
PF02837. Glyco_hydro_2_N. 1 hit.
[Graphical view]

PRINTS

PR00132. GLHYDRLASE2.

SUPFAM

SSF49785. Gal_bind_like. 1 hit.
SSF49303. Glyco_hydro_2Ig. 1 hit.
SSF51445. Glyco_hydro_cat. 1 hit.

ProtoNet

Search...

Entry information

Entry name

Q5LIC7_BACFN

Accession

Primary (citable) accession number: Q5LIC7

Entry history

Integrated into UniProtKB/TrEMBL:	June 21, 2005
Last sequence update:	June 21, 2005
Last modified:	December 14, 2011
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)