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Protein

Glutamate decarboxylase

Gene

gadB

Organism
Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

DecarboxylaseUniRule annotation, Lyase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciBFRA272559:GKF0-385-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
Gene namesi
Name:gadBImported
ORF Names:BF9343_0382Imported
OrganismiBacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343)Imported
Taxonomic identifieri272559 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesBacteroidiaBacteroidalesBacteroidaceaeBacteroides
ProteomesiUP000006731 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi272559.BF0393.

Structurei

3D structure databases

ProteinModelPortaliQ5LI66.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000022741.
KOiK01580.
OMAiRNADRYP.
OrthoDBiEOG6TFCPW.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERiPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5LI66-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEDLNFRKGD AKTEAFGSNR MLQPSPVEKI PDGPTTPEIA YQMVKDETFA
60 70 80 90 100
QTQPRLNLAT FVTTYMDDYA TKLMNEAINI NYIDETEYPR IAVMNGKCIN
110 120 130 140 150
IVANLWNSPE KDTWKTGALA IGSSEACMLG GVAAWLRWRK KRQAQGKPFD
160 170 180 190 200
KPNFVISTGF QVVWEKFAQL WQIEMRQVPL TLDKTTLDPE EALKMCDENT
210 220 230 240 250
ICVVPIQGVT WTGLNDDVEA LDKALDAYNA KTGYDIPIHV DAASGGFILP
260 270 280 290 300
FLYPDTKWDF RLKWVLSISV SGHKFGLVYP GLGWVVWKGK EYLPEEMAFS
310 320 330 340 350
VNYLGANITQ VGLNFSRPAA QILGQYYQFI RLGFQGYKEV QYNSLQIAKY
360 370 380 390 400
IHSQIAKMTP FVNYSEDVVN PLFIWYMKPE YAKNAKWTLY DLQDKLAQHG
410 420 430 440 450
WMVPAYTLPA KLQDYVVMRV VVRQGFSRDM ADMLLGDIKN AIAELEKLEY
460 470 480
PTSTRIAQEK NLPVEAKVFN HTGKPQAAKK
Length:480
Mass (Da):54,594
Last modified:June 21, 2005 - v1
Checksum:i2D028490E1BA5B09
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR626927 Genomic DNA. Translation: CAH06161.1.
RefSeqiWP_005784276.1. NC_003228.3.

Genome annotation databases

EnsemblBacteriaiCAH06161; CAH06161; BF9343_0382.
KEGGibfs:BF9343_0382.
PATRICi21037248. VBIBacFra29119_0388.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR626927 Genomic DNA. Translation: CAH06161.1.
RefSeqiWP_005784276.1. NC_003228.3.

3D structure databases

ProteinModelPortaliQ5LI66.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272559.BF0393.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAH06161; CAH06161; BF9343_0382.
KEGGibfs:BF9343_0382.
PATRICi21037248. VBIBacFra29119_0388.

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000022741.
KOiK01580.
OMAiRNADRYP.
OrthoDBiEOG6TFCPW.

Enzyme and pathway databases

BioCyciBFRA272559:GKF0-385-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERiPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343Imported.

Entry informationi

Entry nameiQ5LI66_BACFN
AccessioniPrimary (citable) accession number: Q5LI66
Entry historyi
Integrated into UniProtKB/TrEMBL: June 21, 2005
Last sequence update: June 21, 2005
Last modified: July 22, 2015
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.