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Q5LGQ9 (Q5LGQ9_BACFN) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 47. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Putative 2-dehydro-3-deoxyphosphooctonate aldolase EMBL CAH06678.1
EC=2.5.1.55 EMBL CAH06678.1
Gene names
Name:kdsA EMBL CAH06678.1
Ordered Locus Names:BF0936
ORF Names:BF9343_0897 EMBL CAH06678.1
OrganismBacteroides fragilis (strain ATCC 25285 / NCTC 9343) [Complete proteome] [HAMAP] EMBL CAH06678.1
Taxonomic identifier272559 [NCBI]
Taxonomic lineageBacteria › Bacteroidetes › Bacteroidia › Bacteroidales › Bacteroidaceae › Bacteroides

Protein attributes

Sequence length267 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate. SAAS SAAS006269

Pathway

Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis. SAAS SAAS006269

Carbohydrate biosynthesis; 3-deoxy-D-manno-octulosonate biosynthesis; 3-deoxy-D-manno-octulosonate from D-ribulose 5-phosphate: step 2/3. SAAS SAAS006269

Subcellular location

Cytoplasm By similarity SAAS SAAS006269.

Ontologies

Keywords
   Biological processLipopolysaccharide biosynthesis SAAS SAAS006269
   Cellular componentCytoplasm SAAS SAAS006269
   Molecular functionTransferase SAAS SAAS006269 EMBL CAH06678.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processbiosynthetic process

Inferred from electronic annotation. Source: InterPro

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: InterPro

   Molecular function3-deoxy-8-phosphooctulonate synthase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q5LGQ9 [UniParc].

Last modified June 21, 2005. Version 1.
Checksum: E8F94D48B275749C

FASTA26729,088
        10         20         30         40         50         60 
MIEQLKNNKT GNFFLLAGPC VIEGEEMAMR IAEKIVNITD KLGIPYVFKG SYRKANRSRL 

        70         80         90        100        110        120 
DSFMGIGDEK ALKVLEKVHN TFGVPTVTDI HAADEAAMAA DYVDILQIPA FLCRQTDLLV 

       130        140        150        160        170        180 
AAAQTGKTIN IKKGQFLSPL AMQFAADKVI EAGNKNVMLT ERGTTFGYQD LVIDYRGIPE 

       190        200        210        220        230        240 
MQSFGYPVIL DVTHSLQQPN QTNGVTGGMP QLIETVAKAG IAVGADGLFI ETHENPAVAK 

       250        260 
SDGANMLKLD RLEGLLTKLV KIREAIM

« Hide

References

[1]"Extensive DNA inversions in the B. fragilis genome control variable gene expression."
Cerdeno-Tarraga A.-M., Patrick S., Crossman L.C., Blakely G., Abratt V., Lennard N., Poxton I., Duerden B., Harris B., Quail M.A., Barron A., Clark L., Corton C., Doggett J., Holden M.T.G., Larke N., Line A., Lord A. expand/collapse author list , Norbertczak H., Ormond D., Price C., Rabbinowitsch E., Woodward J., Barrell B.G., Parkhill J.
Science 307:1463-1465(2005) [PubMed: 15746427] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CR626927 Genomic DNA. Translation: CAH06678.1.
RefSeqYP_210629.1. NC_003228.3.

3D structure databases

ProteinModelPortalQ5LGQ9.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ5LGQ9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3289171.
GenomeReviewsGene locus BF0936 in contig CR626927_GR.
KEGGbfs:BF0936.
PATRIC21038344. VBIBacFra29119_0926.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2877.
HOGENOMHBG575990.
OMANFFLMAG.
ProtClustDBPRK05198.

Family and domain databases

InterProIPR013785. Aldolase_TIM.
IPR006218. DAHP1/KDSA.
IPR006269. KDO8P_synthase.
[Graphical view]
Gene3DG3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KOK01627.
PANTHERPTHR21057:SF2. KDO8P_synthase. 1 hit.
PfamPF00793. DAHP_synth_1. 1 hit.
[Graphical view]
TIGRFAMsTIGR01362. KDO8P_synth. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ5LGQ9_BACFN
AccessionPrimary (citable) accession number: Q5LGQ9
Entry history
Integrated into UniProtKB/TrEMBL: June 21, 2005
Last sequence update: June 21, 2005
Last modified: December 14, 2011
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info