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Q5LDN2

- GCSP_BACFN

UniProt

Q5LDN2 - GCSP_BACFN

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Protein

Glycine dehydrogenase (decarboxylating)

Gene

gcvP

Organism
Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO2 is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.UniRule annotation

Catalytic activityi

Glycine + [glycine-cleavage complex H protein]-N(6)-lipoyl-L-lysine = [glycine-cleavage complex H protein]-S-aminomethyl-N(6)-dihydrolipoyl-L-lysine + CO2.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

  1. glycine dehydrogenase (decarboxylating) activity Source: UniProtKB-EC
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. glycine decarboxylation via glycine cleavage system Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

Pyridoxal phosphate

Enzyme and pathway databases

BioCyciBFRA272559:GKF0-2014-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Glycine dehydrogenase (decarboxylating)UniRule annotation (EC:1.4.4.2UniRule annotation)
Alternative name(s):
Glycine cleavage system P-proteinUniRule annotation
Glycine decarboxylaseUniRule annotation
Glycine dehydrogenase (aminomethyl-transferring)UniRule annotation
Gene namesi
Name:gcvPUniRule annotation
Ordered Locus Names:BF2079
OrganismiBacteroides fragilis (strain ATCC 25285 / NCTC 9343)
Taxonomic identifieri272559 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesBacteroidiaBacteroidalesBacteroidaceaeBacteroides
ProteomesiUP000006731: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 949949Glycine dehydrogenase (decarboxylating)PRO_0000227092Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei704 – 7041N6-(pyridoxal phosphate)lysineUniRule annotation

Interactioni

Subunit structurei

The glycine cleavage system is composed of four proteins: P, T, L and H.UniRule annotation

Protein-protein interaction databases

STRINGi272559.BF2079.

Structurei

3D structure databases

ProteinModelPortaliQ5LDN2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the GcvP family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1003.
HOGENOMiHOG000239369.
KOiK00281.
OMAiHRYRTET.
OrthoDBiEOG6HMXDX.

Family and domain databases

Gene3Di3.40.640.10. 2 hits.
HAMAPiMF_00711. GcvP.
InterProiIPR020580. GDC-P_N.
IPR020581. GDC_P.
IPR003437. GDC_P_homo.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERiPTHR11773. PTHR11773. 1 hit.
PfamiPF02347. GDC-P. 2 hits.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 3 hits.
TIGRFAMsiTIGR00461. gcvP. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5LDN2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKTDLLACRH IGVNKADAEV MLRKIGVASL DELIDKTIPA NIRLKAPLAL
60 70 80 90 100
PAPMTEYEFA RHIAELAGKN KLFTTYIGMG WYNTITPAVI QRNVFENPVW
110 120 130 140 150
YTSYTPYQTE VSQGRLEALM NFQTAVCDLT AMPLANCSLL DEATAAAEAV
160 170 180 190 200
TMMYGLRSRN QQKAGANVVF IDENIFPQTL AVITTRAIPQ GIEIRTGKFR
210 220 230 240 250
DLEFTDDLFA CVLQYPNANG NAEDYREFTE KAHTANCKVA VAADILSLAL
260 270 280 290 300
LTPPGEWGAD IVFGTTQRLG TPMFYGGPSA GYFATRDEYK RNMPGRIIGW
310 320 330 340 350
SKDKYGKLCY RMALQTREQH IKREKATSNI CTAQALLATM AGFYTVYHGQ
360 370 380 390 400
EGIRNIASRI HSITVFLEKS IGKLGFKQVN KQYFDTLRFI LPDSVSAQQI
410 420 430 440 450
RTIALSKEVN LRYFDNGDVG LSIDETTDVA AANILLSIFA IAAGKDFQKV
460 470 480 490 500
DDIPEATIIS EELKRQTPYL THEVFSKYHT ETEMMRYIKR LDRKDISLAQ
510 520 530 540 550
SMISLGSCTM KLNAAAEMLP LSCAEFMCMH PLVPEDQAAG YRELIHNLSE
560 570 580 590 600
ELKVITGFAG VSLQPNSGAA GEYAGLRTIR AYLESIGQGH RNKVLIPASA
610 620 630 640 650
HGTNPASAIQ AGFTTVTCAC DEHGNVDMDD LRAKAEENKD DLAALMITYP
660 670 680 690 700
STHGIFETEI VEICQIIHAC GAQVYMDGAN MNAQVGLTNP GFIGADVCHL
710 720 730 740 750
NLHKTFASPH GGGGPGVGPI CVAEHLVPFL PGHGLFGNSQ NEVSAAPFGS
760 770 780 790 800
AGILPITYGY IRMMGAEGLT MATKTAILNA NYLAACLKDT YGIVYRGANG
810 820 830 840 850
FVGHEMILEC RKVYEETGIS ENDIAKRLMD YGYHAPTLSF PVHGTLMIEP
860 870 880 890 900
TESESLSELD NFVLTMLTIW NEIQEVKNGE ADKEDNVLIN APHPEYEVVS
910 920 930 940
DQWEHCYTRE KAAYPIESVR ENKFWVNVAR VDNTLGDRKL LPTCYGCFD
Length:949
Mass (Da):104,591
Last modified:June 21, 2005 - v1
Checksum:iDFCC4995CFFE151D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR626927 Genomic DNA. Translation: CAH07776.1.
RefSeqiYP_211707.1. NC_003228.3.

Genome annotation databases

EnsemblBacteriaiCAH07776; CAH07776; BF9343_1995.
GeneIDi3285560.
KEGGibfs:BF2079.
PATRICi21040630. VBIBacFra29119_2059.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR626927 Genomic DNA. Translation: CAH07776.1 .
RefSeqi YP_211707.1. NC_003228.3.

3D structure databases

ProteinModelPortali Q5LDN2.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 272559.BF2079.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAH07776 ; CAH07776 ; BF9343_1995 .
GeneIDi 3285560.
KEGGi bfs:BF2079.
PATRICi 21040630. VBIBacFra29119_2059.

Phylogenomic databases

eggNOGi COG1003.
HOGENOMi HOG000239369.
KOi K00281.
OMAi HRYRTET.
OrthoDBi EOG6HMXDX.

Enzyme and pathway databases

BioCyci BFRA272559:GKF0-2014-MONOMER.

Family and domain databases

Gene3Di 3.40.640.10. 2 hits.
HAMAPi MF_00711. GcvP.
InterProi IPR020580. GDC-P_N.
IPR020581. GDC_P.
IPR003437. GDC_P_homo.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view ]
PANTHERi PTHR11773. PTHR11773. 1 hit.
Pfami PF02347. GDC-P. 2 hits.
[Graphical view ]
SUPFAMi SSF53383. SSF53383. 3 hits.
TIGRFAMsi TIGR00461. gcvP. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25285 / NCTC 9343.

Entry informationi

Entry nameiGCSP_BACFN
AccessioniPrimary (citable) accession number: Q5LDN2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 7, 2006
Last sequence update: June 21, 2005
Last modified: November 26, 2014
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3