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Q5LCY3 (Q5LCY3_BACFN) Unreviewed, UniProtKB/TrEMBL

Last modified December 11, 2013. Version 47. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:BF9343_2249 EMBL CAH08030.1
OrganismBacteroides fragilis (strain ATCC 25285 / NCTC 9343) [Complete proteome] [HAMAP] EMBL CAH08030.1
Taxonomic identifier272559 [NCBI]
Taxonomic lineageBacteriaBacteroidetesBacteroidiaBacteroidalesBacteroidaceaeBacteroides

Protein attributes

Sequence length245 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   Technical term3D-structure PDB 4I17
Complete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region39 – 413Sulfate 1 binding PDB 4I17
Region165 – 1662Sulfate 2 binding PDB 4I17

Sites

Binding site1671Sulfate 3 PDB 4I17
Binding site2291Sulfate 3 PDB 4I17

Sequences

Sequence LengthMass (Da)Tools
Q5LCY3 [UniParc].

Last modified June 21, 2005. Version 1.
Checksum: 35DE858CD45DE679

FASTA24527,457
        10         20         30         40         50         60 
MKKIILLLAL CFTANNFFAQ TTDPNQLKNE GNDALNAKNY AVAFEKYSEY LKLTNNQDSV 

        70         80         90        100        110        120 
TAYNCGVCAD NIKKYKEAAD YFDIAIKKNY NLANAYIGKS AAYRDMKNNQ EYIATLTEGI 

       130        140        150        160        170        180 
KAVPGNATIE KLYAIYYLKE GQKFQQAGNI EKAEENYKHA TDVTSKKWKT DALYSLGVLF 

       190        200        210        220        230        240 
YNNGADVLRK ATPLASSNKE KYASEKAKAD AAFKKAVDYL GEAVTLSPNR TEIKQMQDQV 


KAMIK 

« Hide

References

« Hide 'large scale' references
[1]"Extensive DNA inversions in the B. fragilis genome control variable gene expression."
Cerdeno-Tarraga A.-M., Patrick S., Crossman L.C., Blakely G., Abratt V., Lennard N., Poxton I., Duerden B., Harris B., Quail M.A., Barron A., Clark L., Corton C., Doggett J., Holden M.T.G., Larke N., Line A., Lord A. expand/collapse author list , Norbertczak H., Ormond D., Price C., Rabbinowitsch E., Woodward J., Barrell B.G., Parkhill J.
Science 307:1463-1465(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 25285 / NCTC 9343.
[2]"Crystal structure of a hypothetical protein (BF2334) from Bacteroides fragilis NCTC 9343 at 1.50 A resolution."
JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG)
Submitted (NOV-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.83 ANGSTROMS) OF 19-245 IN COMPLEX WITH SULFATE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CR626927 Genomic DNA. Translation: CAH08030.1.
RefSeqYP_211956.1. NC_003228.3.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4I17X-ray1.83A19-245[»]
ProteinModelPortalQ5LCY3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING272559.BF2334.

Protocols and materials databases

DNASU3285290.
StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAH08030; CAH08030; BF9343_2249.
GeneID3285290.
KEGGbfs:BF2334.
PATRIC21041190. VBIBacFra29119_2336.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGNOG81843.
HOGENOMHOG000291771.
KOK02651.
OMAYNDGANI.
OrthoDBEOG6CVV9S.
ProtClustDBCLSK822365.

Enzyme and pathway databases

BioCycBFRA272559:GKF0-2271-MONOMER.

Family and domain databases

Gene3D1.25.40.10. 1 hit.
InterProIPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical.
IPR001440. TPR_1.
[Graphical view]
PfamPF00515. TPR_1. 1 hit.
[Graphical view]
PROSITEPS50293. TPR_REGION. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ5LCY3_BACFN
AccessionPrimary (citable) accession number: Q5LCY3
Entry history
Integrated into UniProtKB/TrEMBL: June 21, 2005
Last sequence update: June 21, 2005
Last modified: December 11, 2013
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)